Variant report

Variant	rs57238821
Chromosome Location	chr14:56248041-56248042
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KTN1-AS1-1	chr14:56247854-56249698	XLOC_011037
2	lnc-KTN1-AS1-1	chr14:56247864-56248070	ENSG00000258791.2
3	lnc-KTN1-AS1-1	chr14:56247800-56248072	NONHSAT037025
4	lnc-KTN1-AS1-1	chr14:56247853-56249698	NONHSAT037026
5	lnc-KTN1-AS1-1	chr14:56247853-56249698	NONHSAT037027

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12887389	0.83[ASN][1000 genomes]
rs12893012	0.83[ASN][1000 genomes]
rs35097975	0.84[ASN][1000 genomes]
rs35520206	0.84[ASN][1000 genomes]
rs60963322	0.83[ASN][1000 genomes]
rs8008130	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832804	chr14:56083850-56277632	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv901966	chr14:56160904-56436203	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv901967	chr14:56183127-56252062	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv901968	chr14:56183127-56256651	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv901969	chr14:56183127-56258997	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv901970	chr14:56183127-56265176	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv901971	chr14:56183127-56265176	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv901972	chr14:56185501-56256651	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv901973	chr14:56185908-56252062	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv901974	chr14:56192577-56252062	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv901975	chr14:56192577-56260033	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv901976	chr14:56192577-56265176	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv901977	chr14:56213392-56492996	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56238800-56251800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr14:56238800-56256600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr14:56246000-56248800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr14:56246200-56248400	Enhancers	HUVEC	blood vessel
5	chr14:56246600-56248200	Enhancers	Fetal Heart	heart
6	chr14:56246600-56248200	Enhancers	Stomach Mucosa	stomach
7	chr14:56246600-56248600	Enhancers	Lung	lung
8	chr14:56246800-56248400	Enhancers	NH-A	brain
9	chr14:56246800-56248800	Enhancers	Gastric	stomach
10	chr14:56247000-56248400	Enhancers	Pancreas	Pancrea
11	chr14:56247000-56249000	Enhancers	K562	blood
12	chr14:56247000-56249600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr14:56247400-56258400	Weak transcription	Psoas Muscle	Psoas
14	chr14:56247800-56248400	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr14:56247800-56249200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr14:56247800-56249400	Enhancers	Hela-S3	cervix
17	chr14:56247800-56256800	Weak transcription	Left Ventricle	heart
18	chr14:56247800-56257400	Weak transcription	Right Ventricle	heart
19	chr14:56248000-56248200	Bivalent Enhancer	Osteobl	bone
20	chr14:56248000-56249000	Weak transcription	Muscle Satellite Cultured Cells	--

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