Variant report

Variant	rs572401866
Chromosome Location	chr11:77579964-77579965
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:77575598..77577127-chr11:77577485..77580185,2	K562	blood:
2	chr11:77578952..77581707-chr11:77586888..77589735,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-INTS4-3	chr11:77579768-77580241	NONHSAT023239

Variant related genes	Relation type
ENSG00000087884	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050891	chr11:77416645-77788002	Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv1037292	chr11:77431583-77745934	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv541092	chr11:77431583-77745934	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv949316	chr11:77454076-77769885	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv520740	chr11:77553638-77997936	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
6	nsv1035753	chr11:77577384-77866386	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
7	nsv541093	chr11:77577384-77866386	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
8	nsv555453	chr11:77577494-77618441	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv975953	chr11:77578748-77581969	Weak transcription Strong transcription ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:77548800-77582800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr11:77566000-77592600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr11:77566200-77580000	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr11:77566200-77580400	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr11:77566200-77580600	Weak transcription	HSMM	muscle
6	chr11:77566200-77582000	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr11:77566200-77582600	Weak transcription	Colonic Mucosa	Colon
8	chr11:77566200-77583200	Weak transcription	Pancreas	Pancrea
9	chr11:77566200-77589000	Weak transcription	NHLF	lung
10	chr11:77566200-77589600	Weak transcription	Esophagus	oesophagus
11	chr11:77566200-77594600	Weak transcription	Colon Smooth Muscle	Colon
12	chr11:77566400-77582000	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr11:77566400-77582800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr11:77566400-77583000	Weak transcription	Spleen	Spleen
15	chr11:77566600-77580200	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr11:77566800-77580200	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr11:77566800-77587800	Weak transcription	A549	lung
18	chr11:77567000-77580600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr11:77567000-77581800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr11:77567000-77582600	Weak transcription	HUVEC	blood vessel
21	chr11:77567000-77586600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr11:77567400-77582600	Weak transcription	Placenta	Placenta
23	chr11:77567600-77582600	Weak transcription	Primary T cells from cord blood	blood
24	chr11:77567600-77589600	Weak transcription	HepG2	liver
25	chr11:77567800-77580600	Weak transcription	Rectal Smooth Muscle	rectum
26	chr11:77567800-77582400	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr11:77567800-77582600	Weak transcription	Primary B cells from cord blood	blood
28	chr11:77567800-77582800	Weak transcription	Brain Substantia Nigra	brain
29	chr11:77567800-77582800	Weak transcription	Fetal Brain Female	brain
30	chr11:77567800-77589400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr11:77567800-77594800	Weak transcription	Brain Angular Gyrus	brain
32	chr11:77568000-77580400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr11:77568000-77580400	Weak transcription	Aorta	Aorta
34	chr11:77568000-77580600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr11:77568000-77580600	Weak transcription	GM12878-XiMat	blood
36	chr11:77568000-77580800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr11:77568000-77582400	Weak transcription	Brain Cingulate Gyrus	brain
38	chr11:77568000-77582800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr11:77568000-77583000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr11:77568000-77586800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr11:77568000-77587000	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr11:77568200-77580000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr11:77568200-77582600	Weak transcription	Brain Hippocampus Middle	brain
44	chr11:77568200-77583000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr11:77568200-77589400	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr11:77568200-77590400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr11:77568200-77594600	Weak transcription	Fetal Kidney	kidney
48	chr11:77568400-77580000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr11:77568400-77580000	Weak transcription	Duodenum Mucosa	Duodenum
50	chr11:77568400-77580400	Weak transcription	Brain Germinal Matrix	brain

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