Variant report

Variant	rs572405009
Chromosome Location	chr5:16729623-16729624
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:16723686..16725760-chr5:16727885..16730861,2	MCF-7	breast:
2	chr5:16727860..16733317-chr5:16734761..16739949,6	MCF-7	breast:
3	chr5:16728548..16730757-chr5:16733455..16736411,2	MCF-7	breast:
4	chr5:16710355..16712259-chr5:16729265..16730891,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145555	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869660	chr5:16651289-16766428	Genic enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv880373	chr5:16710572-16785604	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1025225	chr5:16714512-17234866	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv980549	chr5:16728420-16731008	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16682400-16736000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr5:16711200-16736400	Weak transcription	Hela-S3	cervix
3	chr5:16711400-16730200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr5:16711400-16731800	Weak transcription	HMEC	breast
5	chr5:16711600-16736000	Weak transcription	Placenta	Placenta
6	chr5:16713800-16731600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr5:16713800-16735600	Weak transcription	Colonic Mucosa	Colon
8	chr5:16714000-16730200	Weak transcription	Osteobl	bone
9	chr5:16714200-16730400	Weak transcription	NHLF	lung
10	chr5:16714200-16736000	Weak transcription	NHDF-Ad	bronchial
11	chr5:16714400-16730000	Weak transcription	NH-A	brain
12	chr5:16722200-16730200	Weak transcription	Stomach Mucosa	stomach
13	chr5:16722200-16734200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr5:16722400-16729800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr5:16722400-16730000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr5:16722400-16730000	Weak transcription	NHEK	skin
17	chr5:16722400-16730200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr5:16722400-16734000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr5:16722600-16736000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr5:16723400-16735600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr5:16724600-16734800	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr5:16725800-16730000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr5:16727000-16731600	Weak transcription	Gastric	stomach
24	chr5:16727200-16730000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr5:16727600-16735400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr5:16727800-16730200	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr5:16728000-16732800	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr5:16728400-16730400	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr5:16728400-16730600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr5:16728400-16733600	Weak transcription	Fetal Kidney	kidney
31	chr5:16728400-16735000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr5:16728400-16736200	Weak transcription	Ovary	ovary
33	chr5:16728400-16736800	Weak transcription	Stomach Smooth Muscle	stomach
34	chr5:16728600-16730000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr5:16728600-16730200	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr5:16728600-16731800	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr5:16728600-16735000	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr5:16728600-16735200	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr5:16728600-16735400	Weak transcription	Lung	lung
40	chr5:16728600-16736200	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr5:16728800-16730200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr5:16728800-16730200	Weak transcription	Fetal Lung	lung
43	chr5:16728800-16733400	Strong transcription	Fetal Intestine Large	intestine
44	chr5:16728800-16735000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr5:16729000-16730000	Strong transcription	Fetal Intestine Small	intestine
46	chr5:16729000-16730000	Weak transcription	Fetal Muscle Leg	muscle
47	chr5:16729000-16730200	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr5:16729000-16730200	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr5:16729000-16730200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr5:16729000-16730200	Weak transcription	HSMM	muscle

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