Variant report

Variant	rs572419479
Chromosome Location	chr13:52102044-52102045
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1797261	chr13:52100949-52139113	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52097600-52108600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr13:52098200-52106800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr13:52098800-52106800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr13:52099800-52106400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr13:52099800-52107000	Weak transcription	HMEC	breast
6	chr13:52100200-52107000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr13:52100200-52113800	Weak transcription	NHDF-Ad	bronchial
8	chr13:52100600-52106800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr13:52100600-52113000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr13:52100800-52107000	Weak transcription	A549	lung
11	chr13:52101000-52106800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr13:52101000-52106800	Weak transcription	HepG2	liver
13	chr13:52101200-52107000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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