Variant report

Variant	rs572436872
Chromosome Location	chr3:178734924-178734925
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:178734474..178738470-chr3:179037032..179039856,4	K562	blood:
2	chr3:178732002..178735693-chr3:178752423..178754842,3	K562	blood:
3	chr3:178731577..178735974-chr3:179037653..179042692,7	K562	blood:
4	chr3:178734194..178736320-chr3:178865690..178868620,2	K562	blood:
5	chr3:178733361..178735780-chr3:178739021..178740577,2	K562	blood:

Variant related genes	Relation type
ENSG00000121879	Chromatin interaction
ENSG00000229102	Chromatin interaction
ENSG00000121864	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998253	chr3:178622707-179196274	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv536814	chr3:178622707-179196274	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	nsv461026	chr3:178661814-178886609	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv592649	chr3:178661814-178886609	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv1009143	chr3:178731525-178783915	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	esv1799481	chr3:178733212-178782021	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
7	esv1792927	chr3:178734558-178877169	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:178708800-178737800	Weak transcription	Colon Smooth Muscle	Colon
2	chr3:178716400-178755000	Weak transcription	Pancreas	Pancrea
3	chr3:178717400-178744400	Weak transcription	HMEC	breast
4	chr3:178719200-178737600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr3:178720600-178737600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr3:178721400-178737800	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr3:178721400-178738000	Weak transcription	Aorta	Aorta
8	chr3:178722200-178751600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr3:178723400-178749800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr3:178723800-178754200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr3:178727800-178738000	Weak transcription	Fetal Heart	heart
12	chr3:178731200-178735200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr3:178731400-178744400	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr3:178732600-178744200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr3:178732800-178738000	Weak transcription	Fetal Thymus	thymus
16	chr3:178733000-178735400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr3:178733000-178735600	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr3:178733000-178738600	Weak transcription	NH-A	brain
19	chr3:178733200-178735000	Enhancers	Primary T helper cells fromperipheralblood	blood
20	chr3:178733200-178735200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr3:178733200-178735800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
22	chr3:178733200-178736000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr3:178733200-178736000	Enhancers	Primary B cells from cord blood	blood
24	chr3:178733400-178737600	Weak transcription	HUVEC	blood vessel
25	chr3:178733400-178751400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr3:178733600-178736000	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr3:178733800-178735600	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr3:178733800-178737600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr3:178733800-178737600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr3:178733800-178737600	Weak transcription	Brain Hippocampus Middle	brain
31	chr3:178733800-178737600	Weak transcription	Fetal Lung	lung
32	chr3:178733800-178737800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr3:178733800-178738000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr3:178733800-178738000	Weak transcription	K562	blood
35	chr3:178733800-178738200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr3:178733800-178738400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr3:178733800-178738400	Weak transcription	Dnd41	blood
38	chr3:178733800-178742000	Weak transcription	Liver	Liver
39	chr3:178733800-178754600	Weak transcription	Lung	lung
40	chr3:178734000-178735200	Strong transcription	HSMM	muscle
41	chr3:178734000-178736200	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr3:178734000-178737600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr3:178734000-178755200	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr3:178734000-178755400	Weak transcription	HepG2	liver
45	chr3:178734200-178735000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr3:178734200-178735800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr3:178734200-178736000	Flanking Active TSS	GM12878-XiMat	blood
48	chr3:178734200-178737400	Weak transcription	Primary T cells from cord blood	blood
49	chr3:178734400-178735000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr3:178734400-178735800	Enhancers	Primary B cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links