Variant report

Variant	rs572506651
Chromosome Location	chr3:111856955-111856956
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:111856684-111857187	GM12892	blood:	n/a	n/a
2	NFIC	chr3:111853158-111857194	GM12878	blood:	n/a	n/a
3	POLR2A	chr3:111856747-111857247	GM12878	blood:	n/a	n/a
4	POLR2A	chr3:111856693-111857115	GM12891	blood:	n/a	n/a
5	POLR2A	chr3:111856782-111857029	GM12891	blood:	n/a	n/a
6	POLR2A	chr3:111856610-111857149	GM12892	blood:	n/a	n/a
7	POLR2A	chr3:111856751-111857139	GM12892	blood:	n/a	n/a
8	POLR2A	chr3:111856643-111857130	GM12892	blood:	n/a	n/a
9	MTA3	chr3:111856607-111857169	GM12878	blood:	n/a	n/a
10	POLR2A	chr3:111856951-111856974	H1-hESC	embryonic stem cell:	n/a	n/a
11	MTA3	chr3:111845901-111857252	GM12878	blood:	n/a	n/a
12	POLR2A	chr3:111856614-111857198	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:111851024..111853542-chr3:111855899..111858560,2	K562	blood:

Variant related genes	Relation type
GCSAM	TF binding region
ENSG00000174500	Chromatin interaction
ENSG00000261488	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010219	chr3:111856709-111923647	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111848200-111857000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr3:111852200-111857000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr3:111852200-111857600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr3:111852200-111863400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:111852400-111857000	Enhancers	Primary B cells from cord blood	blood
6	chr3:111852400-111857200	Enhancers	Primary B cells from peripheral blood	blood
7	chr3:111852600-111857600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr3:111853200-111857000	Enhancers	Stomach Mucosa	stomach
9	chr3:111853400-111867400	Weak transcription	Gastric	stomach
10	chr3:111853600-111857000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr3:111853800-111857000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr3:111854200-111857000	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr3:111854600-111857000	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr3:111854600-111858000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr3:111854800-111857600	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr3:111854800-111857800	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr3:111855000-111857400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr3:111855000-111857600	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr3:111855000-111858000	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr3:111855200-111858000	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr3:111855400-111857000	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr3:111855400-111857600	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr3:111855400-111858000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr3:111855600-111857000	Enhancers	Primary hematopoietic stem cells	blood
25	chr3:111855800-111857000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr3:111855800-111857000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr3:111855800-111857200	Enhancers	H1 Cell Line	embryonic stem cell
28	chr3:111855800-111857200	Enhancers	Duodenum Mucosa	Duodenum
29	chr3:111856200-111857800	Enhancers	Primary monocytes fromperipheralblood	blood
30	chr3:111856200-111860200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr3:111856200-111867400	Weak transcription	Thymus	Thymus
32	chr3:111856200-111867600	Weak transcription	Left Ventricle	heart
33	chr3:111856400-111857800	Enhancers	Monocytes-CD14+_RO01746	blood
34	chr3:111856400-111861800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr3:111856400-111862400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr3:111856600-111857000	Enhancers	Brain Cingulate Gyrus	brain
37	chr3:111856600-111857600	Enhancers	GM12878-XiMat	blood
38	chr3:111856800-111857200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr3:111856800-111857400	Enhancers	Fetal Intestine Small	intestine

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