Variant report

Variant	rs57254508
Chromosome Location	chr3:133142160-133142161
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:132439632..132442220-chr3:133141166..133143810,2	K562	blood:
2	chr3:132759801..132760742-chr3:133142128..133143076,4	K562	blood:
3	chr3:132759750..132760749-chr3:133142099..133143085,7	MCF-7	breast:
4	chr3:133105415..133106537-chr3:133142074..133142947,6	MCF-7	breast:
5	chr3:132444895..132445778-chr3:133142129..133143849,5	K562	blood:
6	chr3:9757483..9758292-chr3:133142110..133142638,2	MCF-7	breast:
7	chr3:132450051..132450561-chr3:133142135..133143010,2	MCF-7	breast:
8	chr3:133103081..133103646-chr3:133142086..133142975,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73211852	0.94[EUR][1000 genomes]
rs73211865	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877504	chr3:133122216-133172374	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv591820	chr3:133134361-133143318	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv522281	chr3:133137434-133167363	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1007047	chr3:133137664-133181388	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1006289	chr3:133137664-133186808	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133141800-133143000	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr3:133141800-133143000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
3	chr3:133142000-133142200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
4	chr3:133142000-133142200	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
5	chr3:133142000-133142400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr3:133142000-133142400	Enhancers	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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