Variant report

Variant	rs572549720
Chromosome Location	chr8:90627507-90627508
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:5)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:90627324..90629190-chr8:90732562..90735490,2	MCF-7	breast:

(count:5 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NBN-1	chr8:90627412-90627534	ENSG00000251136
2	lnc-NBN-1	chr8:90627412-90627534	ENSG00000251136
3	lnc-NBN-1	chr8:90627412-90627568	NONHSAT127613
4	lnc-NBN-1	chr8:90627412-90627534	ENSG00000251136.4
5	lnc-RIPK2-2	chr8:90627189-90627723	NONHSAT127614

No data

Variant related genes	Relation type
ENSG00000251136	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv465735	chr8:89760311-90729507	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv611714	chr8:89760311-90729507	Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv1028969	chr8:90475194-90650295	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv427825	chr8:90495139-90653696	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv870380	chr8:90546585-90720182	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv1028026	chr8:90553930-90678631	Genic enhancers Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv982109	chr8:90556188-90703631	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
8	nsv1026523	chr8:90558935-90722580	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
9	nsv1019986	chr8:90570309-90628648	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv831389	chr8:90575517-90753120	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
11	nsv1017263	chr8:90605445-90722580	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
12	nsv524399	chr8:90627436-90635791	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:90599600-90650800	Weak transcription	Left Ventricle	heart
2	chr8:90616000-90630000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr8:90616000-90652600	Weak transcription	Ovary	ovary
4	chr8:90621200-90637600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr8:90622400-90630800	Weak transcription	Fetal Muscle Leg	muscle
6	chr8:90623600-90628000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr8:90624000-90629400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr8:90624000-90629400	Enhancers	NHEK	skin
9	chr8:90624200-90629400	Enhancers	HMEC	breast
10	chr8:90624400-90640400	Weak transcription	Aorta	Aorta
11	chr8:90624600-90628000	Weak transcription	NHLF	lung
12	chr8:90624600-90628200	Weak transcription	HSMM	muscle
13	chr8:90624600-90630200	Weak transcription	HSMMtube	muscle
14	chr8:90624600-90642800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr8:90625000-90628000	Weak transcription	NH-A	brain
16	chr8:90625400-90629400	Weak transcription	Fetal Lung	lung
17	chr8:90625600-90628000	Weak transcription	A549	lung
18	chr8:90625800-90628000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr8:90626000-90649200	Weak transcription	Brain Angular Gyrus	brain
20	chr8:90626600-90629400	Enhancers	NHDF-Ad	bronchial
21	chr8:90626800-90628800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr8:90626800-90629400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr8:90627000-90628800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr8:90627000-90629000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr8:90627000-90629400	Enhancers	Osteobl	bone
26	chr8:90627200-90628400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr8:90627400-90627600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr8:90627400-90627800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr8:90627400-90628800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr8:90627400-90629400	Enhancers	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links