Variant report

Variant	rs572553753
Chromosome Location	chr5:35841925-35841926
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022761	chr5:35775802-35902546	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv3379714	chr5:35841120-35843568	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
3	esv3421897	chr5:35841595-35843093	ZNF genes & repeats Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
4	esv2156591	chr5:35841654-35842082	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
5	esv3360086	chr5:35841687-35842066	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
6	esv3382427	chr5:35841727-35842050	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
7	esv3369532	chr5:35841754-35842029	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
8	esv3417843	chr5:35841761-35841927	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
9	esv4578	chr5:35841778-35842025	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
10	esv3399334	chr5:35841819-35841985	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
11	esv1124224	chr5:35841846-35841934	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
12	esv3386165	chr5:35841867-35842035	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35839000-35842000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
2	chr5:35841600-35842600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr5:35841600-35842600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr5:35841600-35845200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr5:35841800-35842800	Weak transcription	Primary T helper cells PMA-I stimulated	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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