Variant report

Variant	rs572558266
Chromosome Location	chr6:140333694-140333695
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1019508	chr6:140317472-140434466	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv527772	chr6:140332096-140337443	Enhancers Flanking Active TSS Weak transcription Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140324800-140334000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:140324800-140338600	Weak transcription	Pancreas	Pancrea
3	chr6:140331400-140334200	Enhancers	Fetal Intestine Small	intestine
4	chr6:140331400-140334400	Enhancers	Fetal Intestine Large	intestine
5	chr6:140331600-140333800	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr6:140331800-140334600	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr6:140332600-140334200	Enhancers	Fetal Heart	heart
8	chr6:140332800-140333800	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr6:140333000-140334000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
10	chr6:140333400-140333800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:140333400-140333800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr6:140333400-140338400	Weak transcription	Liver	Liver
13	chr6:140333600-140335400	Weak transcription	Duodenum Mucosa	Duodenum

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links