Variant report

Variant	rs57260767
Chromosome Location	chr6:121513229-121513230
allele	-/AT/ATATATATATATCT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11154003	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12205580	0.82[EUR][1000 genomes]
rs1343072	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1604279	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1827299	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1846866	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2102102	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2133992	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2892766	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35583988	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35983239	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4476866	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4498397	0.81[EUR][1000 genomes]
rs4946547	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6936507	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7450022	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs905024	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs905025	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs924528	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9320793	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9320794	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9372640	0.81[EUR][1000 genomes]
rs9372641	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9372643	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9372644	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9372645	0.82[EUR][1000 genomes]
rs9372647	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9375007	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9375008	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9375009	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9375011	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9375012	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9375013	0.81[EUR][1000 genomes]
rs9387926	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9387928	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9387930	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9398623	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9398625	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9401373	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9401374	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9401375	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9401376	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9401377	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9401378	0.82[EUR][1000 genomes]
rs9401379	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv604572	chr6:121465011-121544876	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv9987	chr6:121512246-121517842	Weak transcription ZNF genes & repeats Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121478800-121535400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr6:121480200-121535600	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr6:121480800-121535400	Weak transcription	Fetal Intestine Large	intestine
4	chr6:121481000-121535400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr6:121487400-121556000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:121494600-121516600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr6:121495200-121529400	Weak transcription	Primary B cells from cord blood	blood
8	chr6:121496400-121516600	Weak transcription	Fetal Muscle Trunk	muscle
9	chr6:121496800-121535400	Weak transcription	Fetal Lung	lung
10	chr6:121498000-121518000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr6:121498600-121535400	Weak transcription	Pancreas	Pancrea
12	chr6:121499000-121516000	Weak transcription	Aorta	Aorta
13	chr6:121499800-121535800	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr6:121500000-121529000	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr6:121500200-121513800	Weak transcription	Ovary	ovary
16	chr6:121502600-121529000	Weak transcription	Left Ventricle	heart
17	chr6:121502800-121521200	Weak transcription	Primary B cells from peripheral blood	blood
18	chr6:121503000-121516800	Weak transcription	Primary T cells from cord blood	blood
19	chr6:121503000-121520600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr6:121503200-121513600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr6:121503200-121517000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr6:121503200-121517600	Weak transcription	Dnd41	blood
23	chr6:121503800-121514400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr6:121509600-121575400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr6:121511400-121535400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr6:121511800-121521200	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr6:121511800-121535400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr6:121512600-121522000	Weak transcription	Fetal Stomach	stomach

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