Variant report

Variant	rs572623181
Chromosome Location	chr10:23481139-23481140
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTBP2	chr10:23479936-23482481	H1-hESC	embryonic stem cell:	n/a	n/a
2	SUZ12	chr10:23479864-23482543	NT2-D1	testis:	n/a	n/a
3	MAX	chr10:23480702-23481272	H1-hESC	embryonic stem cell:	n/a	n/a
4	E2F6	chr10:23480742-23481213	H1-hESC	embryonic stem cell:	n/a	chr10:23481163-23481172
5	SUZ12	chr10:23479777-23482696	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
PTF1A	TF binding region

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825301	chr10:23440604-23505846	Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv831810	chr10:23445647-23605270	Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv825302	chr10:23457022-23497329	Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2754706	chr10:23477062-23509344	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2756096	chr10:23477062-23509344	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv430137	chr10:23477062-23509344	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv3408507	chr10:23479971-23482819	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
8	esv3322961	chr10:23480571-23483119	Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
9	esv3374760	chr10:23480971-23483819	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23479200-23481600	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr10:23479200-23483400	Active TSS	Pancreas	Pancrea
3	chr10:23479600-23481400	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr10:23479800-23482600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
5	chr10:23480000-23481600	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
6	chr10:23480000-23481800	Bivalent Enhancer	Fetal Brain Male	brain
7	chr10:23480200-23481200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr10:23480200-23482400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
9	chr10:23480200-23482600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
10	chr10:23480200-23484400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
11	chr10:23480400-23481400	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
12	chr10:23480400-23481400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
13	chr10:23480400-23481800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
14	chr10:23480400-23482400	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
15	chr10:23480400-23482400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
16	chr10:23480400-23482600	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr10:23480600-23481600	Bivalent Enhancer	Colonic Mucosa	Colon
18	chr10:23480600-23481800	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
19	chr10:23480600-23482200	Bivalent Enhancer	Spleen	Spleen
20	chr10:23480800-23481200	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr10:23480800-23481200	Bivalent Enhancer	Brain Hippocampus Middle	brain
22	chr10:23480800-23481600	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
23	chr10:23480800-23481600	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr10:23480800-23481600	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr10:23480800-23481600	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr10:23480800-23481600	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
27	chr10:23480800-23482000	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
28	chr10:23480800-23482200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
29	chr10:23480800-23482200	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr10:23480800-23482200	Bivalent Enhancer	Brain Inferior Temporal Lobe	brain
31	chr10:23480800-23482200	Bivalent/Poised TSS	Fetal Brain Female	brain
32	chr10:23480800-23482200	Bivalent Enhancer	Stomach Smooth Muscle	stomach
33	chr10:23480800-23482800	Active TSS	Pancreatic Islets	Pancreatic Islet
34	chr10:23481000-23481200	Bivalent Enhancer	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr10:23481000-23481200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr10:23481000-23481200	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
37	chr10:23481000-23481200	Active TSS	Primary hematopoietic stem cells	blood
38	chr10:23481000-23481200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr10:23481000-23481600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
40	chr10:23481000-23481600	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr10:23481000-23481600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr10:23481000-23482200	Flanking Bivalent TSS/Enh	Right Ventricle	heart
43	chr10:23481000-23482400	Enhancers	Liver	Liver

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