Variant report

Variant	rs57262535
Chromosome Location	chr3:143542706-143542707
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:143540836..143543345-chr3:143547418..143549416,3	MCF-7	breast:
2	chr3:143531756..143533614-chr3:143541669..143543725,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10513218	1.00[ASN][1000 genomes]
rs2361205	0.81[ASN][1000 genomes]
rs56124843	1.00[ASN][1000 genomes]
rs58621433	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59653678	1.00[ASN][1000 genomes]
rs60249173	0.81[ASN][1000 genomes]
rs60550983	0.81[ASN][1000 genomes]
rs6762196	1.00[ASN][1000 genomes]
rs6768399	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73869037	0.81[ASN][1000 genomes]
rs73869039	0.81[ASN][1000 genomes]
rs73869041	0.81[ASN][1000 genomes]
rs7637640	0.81[ASN][1000 genomes]
rs7653164	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	esv3418674	chr3:143457005-143558357	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1009935	chr3:143497700-143610852	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1001076	chr3:143513526-143547076	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv536747	chr3:143513526-143547076	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143514200-143544200	Weak transcription	Primary T cells from cord blood	blood
2	chr3:143529600-143543800	Weak transcription	Stomach Mucosa	stomach
3	chr3:143531000-143543200	Weak transcription	NHDF-Ad	bronchial
4	chr3:143531800-143543200	Weak transcription	Aorta	Aorta
5	chr3:143533600-143543200	Weak transcription	Fetal Lung	lung
6	chr3:143533800-143543200	Weak transcription	Right Atrium	heart
7	chr3:143536000-143545200	Weak transcription	Gastric	stomach
8	chr3:143539200-143544600	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr3:143539400-143545000	Weak transcription	Liver	Liver
10	chr3:143539600-143546600	Weak transcription	Esophagus	oesophagus
11	chr3:143539600-143550000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr3:143539800-143558200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr3:143540000-143543000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr3:143540000-143549600	Weak transcription	HSMM	muscle
15	chr3:143540600-143543200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr3:143541000-143543400	Weak transcription	Primary B cells from peripheral blood	blood
17	chr3:143541000-143554200	Weak transcription	Fetal Muscle Trunk	muscle
18	chr3:143541200-143543200	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr3:143541200-143543400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr3:143541400-143543400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr3:143541400-143543600	Weak transcription	Dnd41	blood
22	chr3:143541400-143543600	Enhancers	Monocytes-CD14+_RO01746	blood
23	chr3:143541400-143544000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr3:143541400-143544000	Weak transcription	Fetal Thymus	thymus
25	chr3:143541400-143544600	Weak transcription	Primary hematopoietic stem cells	blood
26	chr3:143541400-143545200	Weak transcription	Spleen	Spleen
27	chr3:143541400-143565200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr3:143541600-143543400	Weak transcription	GM12878-XiMat	blood
29	chr3:143541600-143543800	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr3:143541600-143543800	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr3:143541600-143544000	Weak transcription	Primary B cells from cord blood	blood
32	chr3:143541800-143543200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr3:143541800-143543200	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr3:143541800-143543400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr3:143541800-143543800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr3:143541800-143544000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr3:143541800-143549800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr3:143542000-143543200	Weak transcription	Fetal Stomach	stomach
39	chr3:143542000-143553600	Weak transcription	Brain Cingulate Gyrus	brain
40	chr3:143542200-143543200	Weak transcription	Brain Substantia Nigra	brain
41	chr3:143542200-143543200	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr3:143542200-143543400	Weak transcription	Rectal Smooth Muscle	rectum
43	chr3:143542200-143549800	Weak transcription	Brain Anterior Caudate	brain
44	chr3:143542200-143552400	Weak transcription	Brain Angular Gyrus	brain
45	chr3:143542200-143553600	Weak transcription	Brain Hippocampus Middle	brain
46	chr3:143542400-143543200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr3:143542400-143543200	Weak transcription	Colon Smooth Muscle	Colon
48	chr3:143542400-143543200	Weak transcription	Fetal Muscle Leg	muscle
49	chr3:143542600-143543000	Weak transcription	Adipose Nuclei	Adipose

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