Variant report

Variant	rs572634896
Chromosome Location	chr19:35849343-35849344
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr19:35849039-35849353	Hela-S3	cervix:	n/a	chr19:35849192-35849203
2	FOS	chr19:35849023-35849345	MCF10A-Er-Src	breast:	n/a	n/a
3	CEBPB	chr19:35849027-35849357	HepG2	liver:	n/a	chr19:35849192-35849203
4	CEBPB	chr19:35849025-35849368	K562	blood:	n/a	chr19:35849192-35849203
5	JUND	chr19:35849103-35849606	HepG2	liver:	n/a	chr19:35849432-35849441
6	ATF1	chr19:35849261-35849449	K562	blood:	n/a	n/a
7	CEBPB	chr19:35849029-35849356	A549	lung:	n/a	chr19:35849192-35849203
8	SPI1	chr19:35848923-35849412	HL-60	blood:	n/a	chr19:35849278-35849285
9	CEBPB	chr19:35849017-35849385	IMR90	lung:	n/a	chr19:35849192-35849203
10	STAT3	chr19:35849068-35849351	MCF10A-Er-Src	breast:	n/a	chr19:35849275-35849287

Variant related genes	Relation type
FFAR3	TF binding region

Extended variants
information (count: 41 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:41 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv1060100	chr19:35658505-36170042	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv543993	chr19:35658505-36170042	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
4	nsv510765	chr19:35708226-35890668	Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
5	esv2758497	chr19:35711078-35887113	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
6	esv2758758	chr19:35711078-35887113	Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
7	nsv833810	chr19:35782588-35971959	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
8	esv1828194	chr19:35812566-35865695	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
9	nsv173	chr19:35837405-35866835	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
10	nsv2471	chr19:35837405-35903115	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
11	esv3399851	chr19:35841723-35854402	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
12	esv2762943	chr19:35846150-35861848	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
13	nsv978808	chr19:35847153-35852217	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	nsv869598	chr19:35847245-35870922	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
15	esv1818841	chr19:35848339-35863299	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
16	esv1819320	chr19:35848565-35865695	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
17	nsv9712	chr19:35848806-35864407	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
18	esv32683	chr19:35848807-35864349	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
19	nsv828536	chr19:35849045-35852267	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
20	nsv828537	chr19:35849045-35865869	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
21	nsv1059785	chr19:35849061-35861767	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
22	nsv1062873	chr19:35849061-35861836	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
23	esv2760519	chr19:35849061-35861848	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
24	nsv1058164	chr19:35849061-35878368	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
25	nsv820224	chr19:35849075-35863010	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
26	nsv1063118	chr19:35849159-35861836	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
27	nsv1065016	chr19:35849175-35861836	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
28	nsv1056060	chr19:35849209-35861836	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
29	esv13778	chr19:35849254-35865601	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
30	esv1796999	chr19:35849255-35863233	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
31	esv1792832	chr19:35849255-35864127	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
32	esv1816560	chr19:35849255-35864127	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
33	esv1819943	chr19:35849255-35864127	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
34	esv1827336	chr19:35849255-35864127	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
35	esv1831949	chr19:35849255-35864127	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
36	esv1795389	chr19:35849255-35872155	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
37	nsv1057640	chr19:35849297-35861158	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
38	nsv1058174	chr19:35849297-35861767	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
39	nsv1065890	chr19:35849297-35861836	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
40	nsv1062973	chr19:35849297-35866942	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
41	nsv1056634	chr19:35849310-35861836	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:35847200-35852000	Weak transcription	GM12878-XiMat	blood
2	chr19:35848200-35849400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
3	chr19:35848200-35849600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr19:35848400-35849400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr19:35848400-35849400	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr19:35848400-35849400	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr19:35848400-35849400	Enhancers	Fetal Muscle Leg	muscle
8	chr19:35848400-35849400	Enhancers	HepG2	liver
9	chr19:35848400-35849600	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr19:35848400-35849600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr19:35848400-35849600	Enhancers	Placenta	Placenta
12	chr19:35848600-35849400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr19:35848600-35849400	Enhancers	Gastric	stomach
14	chr19:35848600-35849400	Enhancers	Pancreas	Pancrea
15	chr19:35848800-35849400	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr19:35848800-35849400	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr19:35848800-35849400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr19:35848800-35849400	Flanking Active TSS	Adipose Nuclei	Adipose
19	chr19:35848800-35849400	Enhancers	Liver	Liver
20	chr19:35848800-35849400	Enhancers	Brain Germinal Matrix	brain
21	chr19:35848800-35849400	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
22	chr19:35848800-35849400	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr19:35848800-35849600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
24	chr19:35848800-35849600	Enhancers	Primary hematopoietic stem cells	blood
25	chr19:35848800-35849600	Enhancers	Primary T helper cells fromperipheralblood	blood
26	chr19:35848800-35849600	Enhancers	Lung	lung
27	chr19:35849000-35849400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
28	chr19:35849000-35849400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr19:35849000-35849400	Enhancers	Primary T killer memory cells from peripheral blood	blood
30	chr19:35849000-35849400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr19:35849000-35849400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
32	chr19:35849000-35849400	Flanking Active TSS	Fetal Lung	lung
33	chr19:35849000-35849400	Enhancers	Ovary	ovary
34	chr19:35849000-35849400	Enhancers	Spleen	Spleen
35	chr19:35849200-35849400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
36	chr19:35849200-35849400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
37	chr19:35849200-35849400	Enhancers	Brain Hippocampus Middle	brain
38	chr19:35849200-35849400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
39	chr19:35849200-35849600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
40	chr19:35849200-35849600	Enhancers	Stomach Mucosa	stomach
41	chr19:35849200-35850000	Enhancers	Monocytes-CD14+_RO01746	blood

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