Variant report

Variant	rs572651941
Chromosome Location	chr3:160285800-160285801
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:160285778-160285836	MCF-7	breast:	n/a	n/a
2	POLR2A	chr3:160285787-160285905	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr3:160165891..160168986-chr3:160283501..160286413,4	K562	blood:
2	chr3:160281906..160285341-chr3:160285654..160289811,8	MCF-7	breast:
3	chr3:160165801..160167391-chr3:160284829..160286413,2	K562	blood:

Variant related genes	Relation type
KPNA4	TF binding region
ENSG00000186432	Chromatin interaction
ENSG00000229320	Chromatin interaction
ENSG00000213186	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv1000453	chr3:159853305-160366357	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	259 gene(s)	inside rSNPs	diseases
3	nsv536779	chr3:159853305-160366357	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	259 gene(s)	inside rSNPs	diseases
4	nsv1008519	chr3:160038710-160292589	Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	255 gene(s)	inside rSNPs	diseases
5	nsv877702	chr3:160262803-160304614	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
6	nsv4089	chr3:160284848-160330024	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv963373	chr3:160285741-160287108	ZNF genes & repeats Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160284200-160285800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:160284200-160285800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:160284200-160285800	Weak transcription	Esophagus	oesophagus
4	chr3:160284200-160285800	Weak transcription	Gastric	stomach
5	chr3:160284200-160286200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr3:160284200-160286400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:160284200-160289600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr3:160284400-160286200	Weak transcription	Pancreas	Pancrea
9	chr3:160284400-160286600	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr3:160284400-160286800	Weak transcription	Fetal Thymus	thymus
11	chr3:160284600-160285800	Weak transcription	Fetal Muscle Trunk	muscle
12	chr3:160284600-160286200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr3:160284600-160286200	Weak transcription	Left Ventricle	heart
14	chr3:160284600-160286400	Weak transcription	Aorta	Aorta
15	chr3:160284600-160286400	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr3:160284600-160286800	Weak transcription	Thymus	Thymus
17	chr3:160284600-160287000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr3:160284600-160288400	Weak transcription	Ovary	ovary
19	chr3:160284800-160285800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr3:160284800-160285800	Weak transcription	Primary hematopoietic stem cells	blood
21	chr3:160284800-160285800	Weak transcription	Right Ventricle	heart
22	chr3:160284800-160287200	Weak transcription	Primary B cells from peripheral blood	blood
23	chr3:160284800-160287200	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr3:160284800-160287600	Weak transcription	Fetal Intestine Large	intestine
25	chr3:160284800-160287800	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr3:160284800-160288200	Weak transcription	Brain Substantia Nigra	brain
27	chr3:160284800-160288400	Weak transcription	Duodenum Mucosa	Duodenum
28	chr3:160284800-160289600	Weak transcription	Fetal Lung	lung
29	chr3:160284800-160292000	Weak transcription	Brain Anterior Caudate	brain
30	chr3:160284800-160295000	Weak transcription	Stomach Mucosa	stomach
31	chr3:160284800-160295200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr3:160285000-160285800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr3:160285000-160285800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr3:160285000-160285800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr3:160285000-160285800	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr3:160285000-160286000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr3:160285000-160286000	Weak transcription	Adipose Nuclei	Adipose
38	chr3:160285000-160287000	Weak transcription	Brain Hippocampus Middle	brain
39	chr3:160285000-160287200	Weak transcription	GM12878-XiMat	blood
40	chr3:160285000-160287400	Enhancers	Dnd41	blood
41	chr3:160285000-160287800	Weak transcription	Primary neutrophils fromperipheralblood	blood
42	chr3:160285000-160287800	Weak transcription	Liver	Liver
43	chr3:160285000-160289600	Weak transcription	Stomach Smooth Muscle	stomach
44	chr3:160285000-160290800	Weak transcription	Brain Cingulate Gyrus	brain
45	chr3:160285000-160292200	Weak transcription	Primary B cells from cord blood	blood
46	chr3:160285200-160285800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr3:160285200-160285800	Enhancers	NHEK	skin
48	chr3:160285200-160286000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr3:160285200-160286000	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr3:160285200-160286200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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