Variant report

Variant	rs57265221
Chromosome Location	chr7:39868024-39868025
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs57636105	1.00[AMR][1000 genomes]
rs60588694	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73385784	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73389688	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73389692	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73389693	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427777	chr7:39726513-39936904	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv887973	chr7:39772654-40110720	Strong transcription Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
3	nsv887974	chr7:39827400-39956829	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv887975	chr7:39858378-40124137	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39866600-39868200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr7:39866600-39868200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr7:39866600-39872400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr7:39866800-39872400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr7:39867000-39868600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr7:39867400-39869200	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr7:39867600-39868600	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr7:39867600-39868800	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr7:39867800-39868200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr7:39868000-39868800	Enhancers	iPS-20b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links