Variant report

Variant	rs572660026
Chromosome Location	chr10:5818490-5818491
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:5814258..5816443-chr10:5818047..5819761,2	K562	blood:
2	chr10:5816487..5819223-chr10:5854186..5856565,2	MCF-7	breast:
3	chr10:5815026..5819070-chr10:5852954..5857275,5	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM208B-3	chr10:5818034-5818821	NONHSAT011186

Variant related genes	Relation type
ENSG00000057608	Chromatin interaction
ENSG00000272764	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534685	chr10:4914018-5853324	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
5	nsv831775	chr10:5804335-6000849	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
6	nsv947730	chr10:5817688-5827238	Strong transcription Genic enhancers Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:5762600-5843400	Strong transcription	Dnd41	blood
2	chr10:5762800-5843000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr10:5768000-5849400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr10:5781400-5818600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr10:5796000-5822400	Strong transcription	Fetal Intestine Large	intestine
6	chr10:5797200-5819000	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr10:5797400-5847400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
8	chr10:5798000-5842800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr10:5798200-5843000	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr10:5798600-5820200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr10:5798600-5842800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
12	chr10:5805000-5843200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr10:5805200-5819000	Strong transcription	GM12878-XiMat	blood
14	chr10:5807400-5821800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr10:5808400-5826400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr10:5808800-5825800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr10:5809000-5824400	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr10:5810400-5824800	Weak transcription	Ovary	ovary
19	chr10:5811800-5824400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr10:5812000-5823800	Weak transcription	Fetal Kidney	kidney
21	chr10:5812000-5824000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr10:5812400-5821600	Weak transcription	Brain Germinal Matrix	brain
23	chr10:5813000-5818600	Strong transcription	NHEK	skin
24	chr10:5813000-5818800	Strong transcription	HepG2	liver
25	chr10:5813000-5819200	Strong transcription	K562	blood
26	chr10:5814600-5822600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr10:5814800-5819000	Strong transcription	A549	lung
28	chr10:5815400-5818600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr10:5816000-5820200	Strong transcription	Fetal Intestine Small	intestine
30	chr10:5816400-5818800	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr10:5816400-5819000	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr10:5816400-5819000	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr10:5816400-5819200	Enhancers	Colon Smooth Muscle	Colon
34	chr10:5816600-5818600	Strong transcription	HUVEC	blood vessel
35	chr10:5816600-5818800	Enhancers	Right Ventricle	heart
36	chr10:5816600-5819000	Genic enhancers	Primary B cells from peripheral blood	blood
37	chr10:5816600-5819000	Enhancers	Fetal Heart	heart
38	chr10:5816800-5818800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
39	chr10:5816800-5818800	Genic enhancers	Fetal Thymus	thymus
40	chr10:5816800-5819400	Enhancers	Skeletal Muscle Male	skeletal muscle
41	chr10:5817000-5819000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
42	chr10:5817000-5819400	Enhancers	Primary T helper naive cells from peripheral blood	blood
43	chr10:5817200-5819200	Enhancers	Primary T helper cells fromperipheralblood	blood
44	chr10:5817200-5819600	Weak transcription	Fetal Lung	lung
45	chr10:5817200-5831200	Weak transcription	Pancreas	Pancrea
46	chr10:5817400-5818800	Enhancers	iPS-15b Cell Line	embryonic stem cell
47	chr10:5817400-5819200	Enhancers	Primary T killer memory cells from peripheral blood	blood
48	chr10:5817400-5819600	Enhancers	Skeletal Muscle Female	skeletal muscle
49	chr10:5817400-5821000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr10:5817600-5818800	Genic enhancers	Primary B cells from cord blood	blood

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