Variant report

Variant	rs57266861
Chromosome Location	chr4:55876912-55876913
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs12502309	0.88[EUR][1000 genomes]
rs12640896	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13101326	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13101685	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13101777	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13104623	0.95[EUR][1000 genomes]
rs13106311	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13110915	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13111813	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13111838	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13114647	0.93[EUR][1000 genomes]
rs13125964	0.83[EUR][1000 genomes]
rs13126022	0.93[EUR][1000 genomes]
rs13126236	0.85[EUR][1000 genomes]
rs13127180	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13127753	0.95[EUR][1000 genomes]
rs13129153	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13130324	0.93[EUR][1000 genomes]
rs13138898	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13144612	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13146834	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4259115	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4317261	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4320192	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4334808	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4336286	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4337782	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4356964	0.85[EUR][1000 genomes]
rs4524450	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4569809	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4599477	0.93[EUR][1000 genomes]
rs61696777	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6554219	0.92[EUR][1000 genomes]
rs6554222	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6554223	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6820549	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6821744	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6822352	0.93[EUR][1000 genomes]
rs6824426	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6826834	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs71624987	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7657044	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7667898	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526344	chr4:55522488-56231119	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv948758	chr4:55748430-55887962	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv829939	chr4:55856771-56005011	Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:55870800-55877400	Weak transcription	Fetal Lung	lung
2	chr4:55872800-55883000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:55873000-55883000	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr4:55874800-55879000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr4:55875400-55878400	Weak transcription	HUVEC	blood vessel
6	chr4:55875400-55879000	Weak transcription	Right Atrium	heart
7	chr4:55876800-55879800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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