Variant report

Variant	rs57266987
Chromosome Location	chr5:95108075-95108076
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:94982637..94984996-chr5:95106637..95108174,2	MCF-7	breast:
2	chr5:95066357..95067892-chr5:95107550..95109292,2	MCF-7	breast:
3	chr5:95107548..95110514-chr5:95121427..95123562,2	K562	blood:
4	chr5:95107150..95109426-chr5:95124440..95127276,2	K562	blood:
5	chr5:94981340..94984731-chr5:95103817..95108133,4	K562	blood:
6	chr5:95065025..95070495-chr5:95104357..95109380,7	K562	blood:
7	chr5:95095191..95099544-chr5:95107750..95111089,4	K562	blood:

Variant related genes	Relation type
ENSG00000164292	Chromatin interaction
ENSG00000175449	Chromatin interaction
ENSG00000250240	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs57120385	0.82[AFR][1000 genomes]
rs58614562	1.00[AFR][1000 genomes]
rs9763677	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598955	chr5:94903453-95136019	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv830409	chr5:95006686-95204496	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95072800-95133400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:95075200-95111800	Weak transcription	Psoas Muscle	Psoas
3	chr5:95083200-95122000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr5:95086800-95110800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr5:95087800-95134000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:95095000-95109000	Weak transcription	Esophagus	oesophagus
7	chr5:95095000-95115000	Weak transcription	Gastric	stomach
8	chr5:95095600-95108800	Weak transcription	Right Atrium	heart
9	chr5:95096200-95110200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr5:95096400-95125400	Weak transcription	Small Intestine	intestine
11	chr5:95096600-95108800	Weak transcription	Right Ventricle	heart
12	chr5:95096600-95117000	Weak transcription	Brain Angular Gyrus	brain
13	chr5:95096600-95129800	Weak transcription	Colonic Mucosa	Colon
14	chr5:95096800-95115000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr5:95097200-95108800	Strong transcription	Fetal Muscle Leg	muscle
16	chr5:95097800-95109000	Strong transcription	Fetal Intestine Large	intestine
17	chr5:95097800-95115000	Weak transcription	Spleen	Spleen
18	chr5:95098000-95108400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr5:95098000-95108800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr5:95098200-95108800	Weak transcription	Fetal Thymus	thymus
21	chr5:95098200-95114400	Weak transcription	Lung	lung
22	chr5:95098400-95109200	Weak transcription	A549	lung
23	chr5:95098600-95108600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr5:95098800-95109000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr5:95099200-95108600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr5:95101200-95109200	Weak transcription	Brain Hippocampus Middle	brain
27	chr5:95102200-95114800	Weak transcription	Brain Substantia Nigra	brain
28	chr5:95102600-95108200	Strong transcription	Muscle Satellite Cultured Cells	--
29	chr5:95102600-95109400	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr5:95102800-95108800	Strong transcription	Placenta	Placenta
31	chr5:95103400-95109000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr5:95104400-95108200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
33	chr5:95104800-95114600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr5:95105000-95108800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr5:95105000-95108800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr5:95105000-95112600	Weak transcription	Fetal Intestine Small	intestine
37	chr5:95105000-95115000	Weak transcription	Aorta	Aorta
38	chr5:95105000-95131800	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr5:95105200-95112600	Weak transcription	Fetal Stomach	stomach
40	chr5:95105400-95116200	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr5:95105400-95116400	Weak transcription	Brain Cingulate Gyrus	brain
42	chr5:95105600-95108800	Weak transcription	Ovary	ovary
43	chr5:95105600-95109000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr5:95105600-95116600	Weak transcription	Colon Smooth Muscle	Colon
45	chr5:95105600-95119200	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr5:95105600-95119800	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr5:95105800-95108200	Weak transcription	Brain Anterior Caudate	brain
48	chr5:95105800-95108800	Weak transcription	Primary hematopoietic stem cells	blood
49	chr5:95105800-95108800	Weak transcription	GM12878-XiMat	blood
50	chr5:95105800-95109000	Weak transcription	Brain Inferior Temporal Lobe	brain

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