Variant report

Variant	rs572769467
Chromosome Location	chr7:105575090-105575091
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:105574677..105575804-chr7:105683017..105683859,4	MCF-7	breast:
2	chr7:105574765..105575920-chr7:105649579..105650587,12	MCF-7	breast:
3	chr7:105574538..105577469-chr7:105580139..105582810,3	K562	blood:
4	chr7:105574766..105575695-chr7:105682948..105683847,3	K562	blood:
5	chr7:105574787..105575640-chr7:105681230..105682228,5	MCF-7	breast:
6	chr7:105574751..105575832-chr7:105682716..105684174,10	MCF-7	breast:
7	chr7:105574810..105577376-chr7:105710755..105713196,2	MCF-7	breast:
8	chr7:105574675..105575918-chr7:105681278..105682539,8	MCF-7	breast:
9	chr7:105572366..105575120-chr7:105681796..105683797,2	MCF-7	breast:
10	chr7:105574574..105576337-chr7:105649129..105650785,24	MCF-7	breast:
11	chr7:105554741..105557044-chr7:105574142..105576076,2	MCF-7	breast:
12	chr7:105573874..105581141-chr7:105646643..105653453,14	MCF-7	breast:
13	chr7:105574767..105575282-chr7:105649685..105650204,2	K562	blood:
14	chr7:105574257..105577406-chr7:105579115..105583082,4	MCF-7	breast:

No data

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027213	chr7:105438610-106022869	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	esv3435895	chr7:105564407-105908056	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv5891	chr7:105575022-105617838	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:105547000-105577800	Weak transcription	Gastric	stomach
2	chr7:105551800-105580600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:105561600-105575200	Weak transcription	HepG2	liver
4	chr7:105565200-105575200	Weak transcription	Liver	Liver
5	chr7:105565200-105575400	Weak transcription	Fetal Intestine Large	intestine
6	chr7:105566000-105577400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr7:105566000-105586400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr7:105567200-105575200	Weak transcription	Primary T cells from cord blood	blood
9	chr7:105567400-105575200	Weak transcription	Pancreas	Pancrea
10	chr7:105567400-105575400	Weak transcription	Fetal Intestine Small	intestine
11	chr7:105571400-105576600	Enhancers	NHDF-Ad	bronchial
12	chr7:105572400-105575400	Enhancers	Rectal Smooth Muscle	rectum
13	chr7:105572400-105575600	Enhancers	Osteobl	bone
14	chr7:105572600-105575600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr7:105572600-105575600	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr7:105572600-105576600	Enhancers	Stomach Smooth Muscle	stomach
17	chr7:105572800-105576200	Enhancers	Colon Smooth Muscle	Colon
18	chr7:105573200-105575200	Weak transcription	Brain Angular Gyrus	brain
19	chr7:105573200-105575600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr7:105573200-105576800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr7:105573400-105576200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr7:105573400-105579800	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr7:105573600-105575600	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr7:105573800-105575200	Weak transcription	Brain Anterior Caudate	brain
25	chr7:105573800-105575200	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr7:105573800-105575800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr7:105573800-105579200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr7:105573800-105580600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr7:105574000-105575200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr7:105574000-105575200	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr7:105574000-105578200	Enhancers	Stomach Mucosa	stomach
32	chr7:105574200-105575200	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr7:105574200-105575200	Weak transcription	Adipose Nuclei	Adipose
34	chr7:105574200-105578800	Weak transcription	Fetal Muscle Leg	muscle
35	chr7:105574200-105583600	Weak transcription	Fetal Stomach	stomach
36	chr7:105574400-105575400	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr7:105574400-105576200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr7:105574600-105575600	Enhancers	Right Atrium	heart
39	chr7:105574800-105575200	Enhancers	Fetal Muscle Trunk	muscle
40	chr7:105574800-105576600	Enhancers	Fetal Heart	heart
41	chr7:105574800-105580600	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr7:105575000-105575600	Enhancers	Muscle Satellite Cultured Cells	--
43	chr7:105575000-105575600	Enhancers	Ovary	ovary
44	chr7:105575000-105575600	Enhancers	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links