Variant report

Variant	rs572803687
Chromosome Location	chr14:22236525-22236526
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr14:22236460-22236610	HMEC	breast:	n/a	chr14:22236543-22236561 chr14:22236544-22236560 chr14:22236545-22236566
2	CTCF	chr14:22236431-22236674	Hela-S3	cervix:	n/a	chr14:22236543-22236561 chr14:22236544-22236560 chr14:22236545-22236566
3	CTCF	chr14:22236344-22236769	H1-hESC	embryonic stem cell:	n/a	chr14:22236543-22236561 chr14:22236544-22236560 chr14:22236545-22236566
4	CTCF	chr14:22236417-22236670	GM12878	blood:	n/a	chr14:22236543-22236561 chr14:22236544-22236560 chr14:22236545-22236566
5	CTCF	chr14:22236414-22236702	SK-N-SH_RA	brain:	n/a	chr14:22236543-22236561 chr14:22236544-22236560 chr14:22236545-22236566
6	CTCF	chr14:22236480-22236630	GM12801	blood:	n/a	chr14:22236543-22236561 chr14:22236544-22236560 chr14:22236545-22236566
7	CTCF	chr14:22236520-22236670	HMEC	breast:	n/a	chr14:22236543-22236561 chr14:22236544-22236560 chr14:22236545-22236566
8	CTCF	chr14:22236460-22236610	HEEpiC	esophagus:	n/a	chr14:22236543-22236561 chr14:22236544-22236560 chr14:22236545-22236566
9	CTCF	chr14:22236491-22236663	GM19239	blood:	n/a	chr14:22236543-22236561 chr14:22236544-22236560 chr14:22236545-22236566
10	CTCF	chr14:22236480-22236630	HVMF	connective:	n/a	chr14:22236543-22236561 chr14:22236544-22236560 chr14:22236545-22236566
11	MAZ	chr14:22236393-22236701	K562	blood:	n/a	n/a
12	CTCF	chr14:22236424-22236694	HUVEC	blood vessel:	n/a	chr14:22236543-22236561 chr14:22236544-22236560 chr14:22236545-22236566
13	CTCF	chr14:22236491-22236627	GM20000	blood:	n/a	chr14:22236543-22236561 chr14:22236544-22236560 chr14:22236545-22236566
14	CTCF	chr14:22236480-22236630	A549	lung:	n/a	chr14:22236543-22236561 chr14:22236544-22236560 chr14:22236545-22236566
15	CTCF	chr14:22236466-22236732	K562	blood:	n/a	chr14:22236543-22236561 chr14:22236544-22236560 chr14:22236545-22236566
16	CTCF	chr14:22236440-22236590	GM12874	blood:	n/a	chr14:22236543-22236561 chr14:22236544-22236560 chr14:22236545-22236566
17	RAD21	chr14:22236306-22236791	MCF-7	breast:	n/a	chr14:22236544-22236563 chr14:22236548-22236557 chr14:22236549-22236561
18	CTCF	chr14:22236500-22236650	HepG2	liver:	n/a	chr14:22236543-22236561 chr14:22236544-22236560 chr14:22236545-22236566
19	CTCF	chr14:22236445-22236626	T-47D	breast:	n/a	chr14:22236543-22236561 chr14:22236544-22236560 chr14:22236545-22236566
20	CTCF	chr14:22236520-22236670	HCFaa	heart:	n/a	chr14:22236543-22236561 chr14:22236544-22236560 chr14:22236545-22236566
21	CTCF	chr14:22236500-22236650	GM12868	blood:	n/a	chr14:22236543-22236561 chr14:22236544-22236560 chr14:22236545-22236566
22	ARID3A	chr14:22236446-22236646	K562	blood:	n/a	n/a
23	CTCF	chr14:22236500-22236650	HCPEpiC	choroid plexus:	n/a	chr14:22236543-22236561 chr14:22236544-22236560 chr14:22236545-22236566
24	CTCF	chr14:22236400-22236550	GM12871	blood:	n/a	n/a
25	CTCF	chr14:22236500-22236650	HBMEC	blood vessel:	n/a	chr14:22236543-22236561 chr14:22236544-22236560 chr14:22236545-22236566
26	CTCF	chr14:22236460-22236610	HBMEC	blood vessel:	n/a	chr14:22236543-22236561 chr14:22236544-22236560 chr14:22236545-22236566
27	CTCF	chr14:22236480-22236630	HUVEC	blood vessel:	n/a	chr14:22236543-22236561 chr14:22236544-22236560 chr14:22236545-22236566
28	CTCF	chr14:22236492-22236658	GM19240	blood:	n/a	chr14:22236543-22236561 chr14:22236544-22236560 chr14:22236545-22236566
29	CTCF	chr14:22236480-22236630	Caco-2	colon:	n/a	chr14:22236543-22236561 chr14:22236544-22236560 chr14:22236545-22236566
30	CTCF	chr14:22236451-22236670	HepG2	liver:	n/a	chr14:22236543-22236561 chr14:22236544-22236560 chr14:22236545-22236566
31	CTCF	chr14:22236480-22236630	AG04450	lung:	n/a	chr14:22236543-22236561 chr14:22236544-22236560 chr14:22236545-22236566
32	CTCF	chr14:22236400-22236550	GM12878	blood:	n/a	n/a
33	CTCF	chr14:22236480-22236630	GM12875	blood:	n/a	chr14:22236543-22236561 chr14:22236544-22236560 chr14:22236545-22236566
34	CTCF	chr14:22236460-22236610	HPF	lung:	n/a	chr14:22236543-22236561 chr14:22236544-22236560 chr14:22236545-22236566
35	RAD21	chr14:22236263-22236752	H1-hESC	embryonic stem cell:	n/a	chr14:22236544-22236563 chr14:22236548-22236557 chr14:22236549-22236561
36	CTCF	chr14:22236453-22236628	Spleen_OC	spleen:	n/a	chr14:22236543-22236561 chr14:22236544-22236560 chr14:22236545-22236566
37	CTCF	chr14:22236500-22236650	GM12866	blood:	n/a	chr14:22236543-22236561 chr14:22236544-22236560 chr14:22236545-22236566
38	CTCF	chr14:22236520-22236670	GM12864	blood:	n/a	chr14:22236543-22236561 chr14:22236544-22236560 chr14:22236545-22236566
39	CTCF	chr14:22236500-22236650	WERI-Rb-1	eye:	n/a	chr14:22236543-22236561 chr14:22236544-22236560 chr14:22236545-22236566
40	CTCF	chr14:22236489-22236626	ProgFib	skin:	n/a	chr14:22236543-22236561 chr14:22236544-22236560 chr14:22236545-22236566
41	CTCF	chr14:22236399-22236722	IMR90	lung:	n/a	chr14:22236543-22236561 chr14:22236544-22236560 chr14:22236545-22236566
42	CTCF	chr14:22236021-22236935	A549	lung:	n/a	chr14:22236543-22236561 chr14:22236544-22236560 chr14:22236545-22236566
43	CTCF	chr14:22236400-22236550	HAc	cerebellar:	n/a	n/a
44	CTCF	chr14:22236500-22236650	A549	lung:	n/a	chr14:22236543-22236561 chr14:22236544-22236560 chr14:22236545-22236566
45	CTCF	chr14:22236460-22236610	GM12872	blood:	n/a	chr14:22236543-22236561 chr14:22236544-22236560 chr14:22236545-22236566
46	CTCF	chr14:22236489-22236670	GM13976	blood:	n/a	chr14:22236543-22236561 chr14:22236544-22236560 chr14:22236545-22236566
47	CTCF	chr14:22236460-22236610	GM12869	blood:	n/a	chr14:22236543-22236561 chr14:22236544-22236560 chr14:22236545-22236566
48	CTCF	chr14:22236460-22236610	AG04449	skin:	n/a	chr14:22236543-22236561 chr14:22236544-22236560 chr14:22236545-22236566
49	CTCF	chr14:22236460-22236610	GM12875	blood:	n/a	chr14:22236543-22236561 chr14:22236544-22236560 chr14:22236545-22236566
50	CTCF	chr14:22236509-22236686	GM19238	blood:	n/a	chr14:22236543-22236561 chr14:22236544-22236560 chr14:22236545-22236566

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr14:22236519-22236569	HPAEpiC	pulmonary alveolar:	n/a
2	chr14:22236519-22236569	SK-N-SH	brain:	n/a
3	chr14:22236519-22236569	SK-N-SH_RA	brain:	n/a
4	chr14:22236519-22236569	NB4	blood:	n/a
5	chr14:22236519-22236569	HIPEpiC	eye:	n/a
6	chr14:22236519-22236569	U87	brain:	n/a
7	chr14:22236519-22236569	NHBE	bronchial:	n/a
8	chr14:22236519-22236569	Caco-2	colon:	n/a
9	chr14:22236519-22236569	SKMC	muscle:	n/a
10	chr14:22236519-22236569	HCM	heart:	n/a
11	chr14:22236519-22236569	HMEC	breast:	n/a
12	chr14:22236519-22236569	ECC-1	luminal epithelium:	n/a
13	chr14:22236519-22236569	HRPEpiC	eye:	n/a
14	chr14:22236519-22236569	NT2-D1	testis:	n/a
15	chr14:22236519-22236569	SK-N-MC	brain:	n/a
16	chr14:22236519-22236569	PrEC	prostate:	n/a
17	chr14:22236519-22236569	ovcar-3	ovarian:	n/a
18	chr14:22236519-22236569	SAEC	small airway:	n/a
19	chr14:22236519-22236569	AG04450	lung:	fetal
20	chr14:22236519-22236569	PFSK-1	brain:	n/a
21	chr14:22236519-22236569	HCT-116	colon:	n/a
22	chr14:22236519-22236569	HAEpiC	amniotic membrane:	n/a
23	chr14:22236519-22236569	MCF-7	breast:	n/a
24	chr14:22236519-22236569	HEEpiC	esophagus:	n/a
25	chr14:22236519-22236569	HL-60	blood:	n/a
26	chr14:22236519-22236569	HCF	heart:	n/a
27	chr14:22236519-22236569	A549	lung:	n/a
28	chr14:22236519-22236569	BE2_C	brain:	n/a
29	chr14:22236519-22236569	GM06990	blood:	n/a
30	chr14:22236519-22236569	AoSMC	blood vessel:	n/a
31	chr14:22236519-22236569	RPTEC	kidney:	n/a
32	chr14:22236519-22236569	NHDF-neo	bronchial:	n/a
33	chr14:22236519-22236569	AG04449	skin:	fetal
34	chr14:22236519-22236569	HCPEpiC	choroid plexus:	n/a
35	chr14:22236519-22236569	HRCEpiC	kidney:	n/a
36	chr14:22236519-22236569	T-47D	breast:	n/a
37	chr14:22236519-22236569	IMR90	lung:	fetal
38	chr14:22236519-22236569	GM12878	blood:	n/a
39	chr14:22236519-22236569	PANC-1	pancreas:	n/a
40	chr14:22236519-22236569	GM12891	blood:	n/a
41	chr14:22236519-22236569	Hepatocyte	liver:	n/a
42	chr14:22236519-22236569	CMK	blood:	n/a
43	chr14:22236519-22236569	HRE	kidney:	n/a
44	chr14:22236519-22236569	LNCaP	prostate:	n/a
45	chr14:22236519-22236569	K562	blood:	n/a
46	chr14:22236519-22236569	GM19239	blood:	n/a
47	chr14:22236519-22236569	Hela-S3	cervix:	n/a
48	chr14:22236519-22236569	AG10803	skin:	n/a
49	chr14:22236519-22236569	MCF10A-Er-Src	breast:	n/a
50	chr14:22236519-22236569	Jurkat	blood:	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:22236090..22236721-chr14:22293035..22293909,3	MCF-7	breast:

Variant related genes	Relation type
TRAV6	TF binding region
TRAV6	CpG island
ENSG00000211784	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042309	chr14:22042511-22866936	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	90 gene(s)	inside rSNPs	diseases
2	nsv456147	chr14:22073473-22305071	Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv563851	chr14:22073473-22305071	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
4	nsv563852	chr14:22205447-22344160	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv528996	chr14:22220569-22242293	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv901480	chr14:22221211-22255090	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1037902	chr14:22229021-22354103	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
8	nsv832741	chr14:22235781-22413637	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:22236200-22236800	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr14:22236200-22237000	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr14:22236200-22237400	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr14:22236200-22237400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr14:22236400-22236600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr14:22236400-22237000	Enhancers	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links