Variant report

Variant	rs572834336
Chromosome Location	chr1:158017688-158017689
allele	-/CTC
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:158014548..158016120-chr1:158017209..158018949,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1823720	chr1:157978556-158034017	Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv999542	chr1:158015715-158368132	Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1005196	chr1:158015996-158065522	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:157997600-158047600	Weak transcription	Dnd41	blood
2	chr1:158001200-158047400	Weak transcription	Thymus	Thymus
3	chr1:158002400-158025400	Weak transcription	Fetal Brain Female	brain
4	chr1:158008000-158019600	Weak transcription	Colonic Mucosa	Colon
5	chr1:158008200-158018400	Weak transcription	Spleen	Spleen
6	chr1:158008200-158023000	Weak transcription	A549	lung
7	chr1:158008200-158024600	Weak transcription	Placenta	Placenta
8	chr1:158009400-158024400	Weak transcription	Hela-S3	cervix
9	chr1:158009600-158022600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr1:158010000-158023000	Weak transcription	HSMM	muscle
11	chr1:158010200-158020600	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr1:158012200-158019800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr1:158013000-158020600	Enhancers	Fetal Lung	lung
14	chr1:158013400-158017800	Enhancers	Adipose Nuclei	Adipose
15	chr1:158013400-158020600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr1:158013600-158020600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr1:158013600-158025600	Weak transcription	Brain Germinal Matrix	brain
18	chr1:158013800-158027000	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr1:158014200-158018200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr1:158014200-158018800	Enhancers	Fetal Kidney	kidney
21	chr1:158015000-158018800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr1:158015200-158019000	Weak transcription	Fetal Muscle Trunk	muscle
23	chr1:158015200-158019200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr1:158015200-158025400	Weak transcription	Left Ventricle	heart
25	chr1:158015200-158036400	Weak transcription	Esophagus	oesophagus
26	chr1:158015400-158020000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr1:158015600-158022800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr1:158015600-158024200	Weak transcription	Fetal Intestine Large	intestine
29	chr1:158015600-158029800	Weak transcription	Gastric	stomach
30	chr1:158015800-158019600	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr1:158016000-158018400	Weak transcription	HMEC	breast
32	chr1:158016000-158019000	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr1:158016000-158019200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr1:158016000-158019400	Weak transcription	Osteobl	bone
35	chr1:158016000-158021400	Weak transcription	Fetal Heart	heart
36	chr1:158016000-158025600	Weak transcription	Fetal Thymus	thymus
37	chr1:158016000-158025800	Weak transcription	Pancreas	Pancrea
38	chr1:158016200-158018800	Weak transcription	Colon Smooth Muscle	Colon
39	chr1:158016200-158019200	Weak transcription	Stomach Smooth Muscle	stomach
40	chr1:158016200-158019400	Weak transcription	Rectal Smooth Muscle	rectum
41	chr1:158016200-158019400	Weak transcription	NH-A	brain
42	chr1:158016200-158019400	Weak transcription	NHLF	lung
43	chr1:158016200-158020400	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr1:158016200-158025600	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr1:158016200-158025600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr1:158016200-158030200	Weak transcription	Fetal Intestine Small	intestine
47	chr1:158016400-158020200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr1:158016600-158018000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr1:158016600-158018200	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr1:158016600-158019200	Weak transcription	Aorta	Aorta

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