Variant report

Variant	rs57287580
Chromosome Location	chr5:146840356-146840357
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11955009	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17106767	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5055	chr5:146812672-146857424	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:146835800-146858800	Weak transcription	NH-A	brain
2	chr5:146836000-146841400	Weak transcription	Osteobl	bone
3	chr5:146836000-146841800	Weak transcription	NHDF-Ad	bronchial
4	chr5:146836000-146842200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr5:146836000-146843600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr5:146836000-146844000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr5:146836000-146845400	Weak transcription	Colon Smooth Muscle	Colon
8	chr5:146836200-146841400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr5:146836200-146844000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr5:146836200-146845200	Weak transcription	Brain Germinal Matrix	brain
11	chr5:146836200-146845200	Weak transcription	Ovary	ovary
12	chr5:146836200-146846200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr5:146836200-146846200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr5:146836200-146851600	Weak transcription	Fetal Stomach	stomach
15	chr5:146836400-146845000	Weak transcription	Fetal Muscle Trunk	muscle
16	chr5:146838400-146844200	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr5:146838400-146846000	Weak transcription	Left Ventricle	heart
18	chr5:146839400-146840800	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr5:146839400-146843600	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr5:146839400-146844000	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr5:146839600-146851600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr5:146839600-146852200	Weak transcription	Aorta	Aorta
23	chr5:146839800-146841600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr5:146839800-146846000	Weak transcription	Rectal Smooth Muscle	rectum
25	chr5:146840000-146840400	ZNF genes & repeats	Stomach Smooth Muscle	stomach
26	chr5:146840000-146843600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr5:146840000-146859200	Weak transcription	NHLF	lung

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