Variant report

Variant	rs57290776
Chromosome Location	chr7:19252927-19252928
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10257954	0.82[ASN][1000 genomes]
rs10258557	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10464208	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10464294	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11535165	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12234750	1.00[EUR][1000 genomes]
rs12667230	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12667931	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4141039	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56879450	1.00[EUR][1000 genomes]
rs58238709	1.00[EUR][1000 genomes]
rs59823544	1.00[EUR][1000 genomes]
rs59873431	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60160395	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60194810	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60912393	1.00[EUR][1000 genomes]
rs61364703	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7789179	0.82[ASN][1000 genomes]
rs9639325	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531020	chr7:18971153-19261019	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv532096	chr7:19094324-19361216	Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv532097	chr7:19105767-19302951	Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1022118	chr7:19178075-19518160	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:19249600-19255000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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