Variant report

Variant	rs572912510
Chromosome Location	chr11:65576373-65576374
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:65574813..65576940-chr11:65582842..65584422,2	MCF-7	breast:
2	chr11:65574740..65577430-chr11:65598861..65600498,2	K562	blood:
3	chr11:65569981..65571499-chr11:65576060..65578225,2	MCF-7	breast:
4	chr11:65547646..65551396-chr11:65574848..65579381,6	K562	blood:
5	chr11:65553157..65555496-chr11:65576050..65577589,2	MCF-7	breast:
6	chr11:65572404..65575326-chr11:65576083..65580070,3	K562	blood:
7	chr11:65547070..65550326-chr11:65573343..65578492,6	MCF-7	breast:
8	chr11:65266414..65268602-chr11:65574457..65576954,2	K562	blood:
9	chr11:65575640..65578882-chr11:65620145..65623092,3	K562	blood:
10	chr11:65576308..65578705-chr11:65600271..65604336,3	MCF-7	breast:
11	chr11:65574802..65576504-chr11:65658689..65661475,2	K562	blood:

No data

No data

No data

Variant related genes	Relation type
ENSG00000175827	Chromatin interaction
ENSG00000172757	Chromatin interaction
ENSG00000254470	Chromatin interaction
ENSG00000251562	Chromatin interaction
ENSG00000172818	Chromatin interaction
ENSG00000172803	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897718	chr11:65140209-65577516	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1003 gene(s)	inside rSNPs	diseases
2	nsv897736	chr11:65335705-65676516	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	227 gene(s)	inside rSNPs	diseases
3	nsv430401	chr11:65419324-65788024	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	224 gene(s)	inside rSNPs	diseases
4	esv2758274	chr11:65559893-65722363	Genic enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
5	esv2759834	chr11:65559893-65722363	Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
6	nsv427890	chr11:65559893-65722363	Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
7	esv10330	chr11:65573764-65580076	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	esv2762915	chr11:65575850-65580638	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
9	esv3357995	chr11:65575876-65580074	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65565600-65577800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:65572000-65577800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:65573800-65577800	Weak transcription	Right Ventricle	heart
4	chr11:65574600-65581400	Weak transcription	Fetal Intestine Small	intestine
5	chr11:65575000-65580000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr11:65575400-65583800	Weak transcription	Brain Substantia Nigra	brain
7	chr11:65575600-65576800	Enhancers	Esophagus	oesophagus
8	chr11:65575800-65577000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr11:65576200-65576400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
10	chr11:65576200-65576400	Bivalent Enhancer	Duodenum Mucosa	Duodenum
11	chr11:65576200-65576400	ZNF genes & repeats	Spleen	Spleen
12	chr11:65576200-65576800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr11:65576200-65576800	Enhancers	Pancreas	Pancrea

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links