Variant report

Variant	rs572928010
Chromosome Location	chr11:8959106-8959107
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BATF	chr11:8958632-8959155	GM12878	blood:	n/a	n/a
2	RUNX3	chr11:8958617-8959171	GM12878	blood:	n/a	n/a
3	POU2F2	chr11:8958623-8959114	GM12891	blood:	n/a	chr11:8959071-8959084
4	NFIC	chr11:8958628-8959175	GM12878	blood:	n/a	n/a
5	PAX5	chr11:8958504-8959180	GM12878	blood:	n/a	chr11:8958846-8958855 chr11:8958845-8958864 chr11:8958846-8958864
6	MTA3	chr11:8958642-8959127	GM12878	blood:	n/a	n/a
7	BCLAF1	chr11:8958629-8959151	GM12878	blood:	n/a	n/a
8	ATF2	chr11:8958557-8959209	GM12878	blood:	n/a	n/a
9	FOXM1	chr11:8958726-8959150	GM12878	blood:	n/a	n/a
10	FOXM1	chr11:8958472-8959152	GM12878	blood:	n/a	n/a
11	NFATC1	chr11:8958614-8959165	GM12878	blood:	n/a	n/a
12	ATF2	chr11:8958641-8959164	GM12878	blood:	n/a	n/a
13	NFIC	chr11:8958546-8959204	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:8957976..8959649-chr11:8961738..8963442,2	K562	blood:

Variant related genes	Relation type
C11orf16	TF binding region

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758256	chr11:8784813-9009573	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv2759803	chr11:8784813-9009573	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv435923	chr11:8839325-9000602	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv832062	chr11:8849295-9009472	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	esv3413845	chr11:8887279-9285127	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
6	nsv430318	chr11:8958492-8964319	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv553448	chr11:8958903-8960257	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv553449	chr11:8958903-8964691	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv553450	chr11:8958903-8964938	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv553451	chr11:8959020-8962764	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv553452	chr11:8959020-8964691	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv553453	chr11:8959020-8964938	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8943800-8969200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr11:8944600-8985000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:8945800-8974000	Weak transcription	Colon Smooth Muscle	Colon
4	chr11:8947000-8968800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr11:8947000-8977000	Weak transcription	Aorta	Aorta
6	chr11:8947400-8969000	Weak transcription	Thymus	Thymus
7	chr11:8947600-8969000	Weak transcription	Brain Cingulate Gyrus	brain
8	chr11:8948200-8969000	Weak transcription	Fetal Brain Female	brain
9	chr11:8948600-8969200	Weak transcription	Gastric	stomach
10	chr11:8948600-8969200	Weak transcription	Stomach Smooth Muscle	stomach
11	chr11:8951200-8974400	Weak transcription	HepG2	liver
12	chr11:8952600-8975800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr11:8952800-8968600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr11:8954400-8984400	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr11:8955200-8976200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr11:8955800-8968000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr11:8956800-8968600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr11:8956800-8969000	Weak transcription	Osteobl	bone
19	chr11:8957000-8962400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr11:8957000-8968000	Weak transcription	HSMM	muscle
21	chr11:8957000-8968800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr11:8957000-8968800	Weak transcription	Fetal Intestine Large	intestine
23	chr11:8957000-8969000	Weak transcription	HSMMtube	muscle
24	chr11:8957000-8969800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr11:8957000-8969800	Weak transcription	Fetal Stomach	stomach
26	chr11:8957000-8974200	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr11:8957000-8980800	Weak transcription	Fetal Heart	heart
28	chr11:8957200-8968800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr11:8957200-8968800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr11:8957200-8969000	Weak transcription	A549	lung
31	chr11:8957200-8969200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr11:8957200-8970200	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr11:8957200-8973400	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr11:8957400-8959200	Weak transcription	K562	blood
35	chr11:8957400-8960400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr11:8957400-8968600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr11:8957400-8968800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr11:8957400-8969000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr11:8957400-8969000	Weak transcription	Fetal Thymus	thymus
40	chr11:8957400-8969000	Weak transcription	NH-A	brain
41	chr11:8957400-8969800	Weak transcription	Spleen	Spleen
42	chr11:8958400-8959600	Enhancers	GM12878-XiMat	blood
43	chr11:8958800-8969000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr11:8959000-8959200	Enhancers	Fetal Kidney	kidney
45	chr11:8959000-8968800	Weak transcription	Placenta	Placenta
46	chr11:8959000-8974000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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