Variant report

Variant	rs572944095
Chromosome Location	chr16:48076255-48076256
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520355	chr16:47424828-48164777	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1798	chr16:48035871-48080541	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv3375126	chr16:48075651-48080349	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48074800-48077200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr16:48074800-48077400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr16:48075000-48077400	Enhancers	Fetal Brain Female	brain
4	chr16:48075200-48077200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr16:48075400-48077200	Enhancers	Brain Germinal Matrix	brain
6	chr16:48075800-48077200	Enhancers	Spleen	Spleen
7	chr16:48075800-48077400	Enhancers	Fetal Brain Male	brain
8	chr16:48075800-48077600	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr16:48076000-48076600	Enhancers	Brain Hippocampus Middle	brain
10	chr16:48076000-48077400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr16:48076200-48076600	Enhancers	Brain Cingulate Gyrus	brain
12	chr16:48076200-48088800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links