Variant report

Variant	rs572964658
Chromosome Location	chr8:67898717-67898718
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	USF1	chr8:67898512-67898914	K562	blood:	n/a	chr8:67898722-67898738 chr8:67898747-67898758
2	USF1	chr8:67898653-67898815	HepG2	liver:	n/a	chr8:67898722-67898738 chr8:67898747-67898758
3	POLR2A	chr8:67898681-67898853	MCF-7	breast:	n/a	n/a
4	YY1	chr8:67898619-67898951	K562	blood:	n/a	chr8:67898784-67898806 chr8:67898786-67898795 chr8:67898783-67898795
5	MAX	chr8:67898634-67898860	K562	blood:	n/a	chr8:67898747-67898758 chr8:67898748-67898757 chr8:67898748-67898755
6	E2F6	chr8:67898635-67898832	K562	blood:	n/a	chr8:67898816-67898825
7	YY1	chr8:67898640-67898849	K562	blood:	n/a	chr8:67898784-67898806 chr8:67898786-67898795 chr8:67898783-67898795
8	USF1	chr8:67898636-67898867	K562	blood:	n/a	chr8:67898722-67898738 chr8:67898747-67898758
9	USF1	chr8:67898663-67898883	H1-hESC	embryonic stem cell:	n/a	chr8:67898722-67898738 chr8:67898747-67898758
10	BHLHE40	chr8:67898634-67898858	K562	blood:	n/a	chr8:67898722-67898738
11	YY1	chr8:67898668-67898882	H1-hESC	embryonic stem cell:	n/a	chr8:67898784-67898806 chr8:67898786-67898795 chr8:67898783-67898795

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr8:67898717-67898767	PFSK-1	brain:	n/a
2	chr8:67898717-67898767	K562	blood:	n/a
3	chr8:67898717-67898767	GM12891	blood:	n/a
4	chr8:67898717-67898767	HepG2	liver:	n/a
5	chr8:67898717-67898767	HEEpiC	esophagus:	n/a
6	chr8:67898717-67898767	SK-N-MC	brain:	n/a
7	chr8:67898717-67898767	HAEpiC	amniotic membrane:	n/a
8	chr8:67898717-67898767	HIPEpiC	eye:	n/a
9	chr8:67898717-67898767	T-47D	breast:	n/a
10	chr8:67898717-67898767	HCPEpiC	choroid plexus:	n/a
11	chr8:67898717-67898767	Hela-S3	cervix:	n/a
12	chr8:67898717-67898767	HUVEC	blood vessel:	n/a
13	chr8:67898717-67898767	AG09319	gingival:	n/a
14	chr8:67898717-67898767	NH-A	brain:	n/a
15	chr8:67898717-67898767	RPTEC	kidney:	n/a
16	chr8:67898717-67898767	BE2_C	brain:	n/a
17	chr8:67898717-67898767	GM12892	blood:	n/a
18	chr8:67898717-67898767	HCM	heart:	n/a
19	chr8:67898717-67898767	HL-60	blood:	n/a
20	chr8:67898717-67898767	AG10803	skin:	n/a
21	chr8:67898717-67898767	AoSMC	blood vessel:	n/a
22	chr8:67898717-67898767	Caco-2	colon:	n/a
23	chr8:67898717-67898767	AG04449	skin:	fetal
24	chr8:67898717-67898767	MCF-7	breast:	n/a
25	chr8:67898717-67898767	HPAEpiC	pulmonary alveolar:	n/a
26	chr8:67898717-67898767	SKMC	muscle:	n/a
27	chr8:67898717-67898767	LNCaP	prostate:	n/a
28	chr8:67898717-67898767	MCF10A-Er-Src	breast:	n/a
29	chr8:67898717-67898767	CMK	blood:	n/a
30	chr8:67898717-67898767	HRCEpiC	kidney:	n/a
31	chr8:67898717-67898767	Jurkat	blood:	n/a
32	chr8:67898717-67898767	A549	lung:	n/a
33	chr8:67898717-67898767	AG04450	lung:	fetal
34	chr8:67898717-67898767	GM19239	blood:	n/a
35	chr8:67898717-67898767	SK-N-SH_RA	brain:	n/a
36	chr8:67898717-67898767	SK-N-SH	brain:	n/a
37	chr8:67898717-67898767	GM12878	blood:	n/a
38	chr8:67898717-67898767	Hepatocyte	liver:	n/a
39	chr8:67898717-67898767	HCF	heart:	n/a
40	chr8:67898717-67898767	U87	brain:	n/a
41	chr8:67898717-67898767	PrEC	prostate:	n/a
42	chr8:67898717-67898767	HCT-116	colon:	n/a
43	chr8:67898717-67898767	ovcar-3	ovarian:	n/a
44	chr8:67898717-67898767	HMEC	breast:	n/a
45	chr8:67898717-67898767	SAEC	small airway:	n/a
46	chr8:67898717-67898767	NHBE	bronchial:	n/a
47	chr8:67898717-67898767	HRE	kidney:	n/a
48	chr8:67898717-67898767	BJ	skin:	n/a
49	chr8:67898717-67898767	ECC-1	luminal epithelium:	n/a
50	chr8:67898717-67898767	NT2-D1	testis:	n/a

Variant related genes	Relation type
PPP1R42	TF binding region
ENSG00000253223	TF binding region
ENSG00000253223	CpG island
PPP1R42	CpG island

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1802652	chr8:67894007-67964309	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67898400-67898800	ZNF genes & repeats	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
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