Variant report

Variant	rs572986534
Chromosome Location	chr7:66100125-66100126
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:66093935..66096906-chr7:66098680..66103505,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000243335	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532124	chr7:65371521-66234730	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
2	nsv1026559	chr7:65617368-66370805	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
3	nsv1035107	chr7:65814901-66114919	Genic enhancers Strong transcription ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
4	nsv538909	chr7:65814901-66114919	Strong transcription Weak transcription Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
5	esv2761151	chr7:66095738-66138285	Flanking Active TSS Strong transcription Genic enhancers Active TSS Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
6	esv3496297	chr7:66099491-66136579	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
7	esv3496298	chr7:66099491-66136579	Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:66094400-66103200	Weak transcription	Small Intestine	intestine
2	chr7:66094800-66103400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:66095000-66101000	Weak transcription	NHEK	skin
4	chr7:66095000-66102400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr7:66095000-66103000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr7:66095000-66103000	Weak transcription	Fetal Kidney	kidney
7	chr7:66095000-66103000	Weak transcription	Fetal Lung	lung
8	chr7:66095000-66103200	Weak transcription	Psoas Muscle	Psoas
9	chr7:66095000-66103400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr7:66095000-66103400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr7:66095000-66103400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr7:66095000-66104200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr7:66095000-66108800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr7:66095000-66109000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr7:66095000-66115200	Weak transcription	HMEC	breast
16	chr7:66095200-66101000	Weak transcription	NHDF-Ad	bronchial
17	chr7:66095200-66103000	Weak transcription	Stomach Mucosa	stomach
18	chr7:66095200-66103200	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr7:66095200-66118400	Weak transcription	Fetal Heart	heart
20	chr7:66095200-66118400	Weak transcription	HUVEC	blood vessel
21	chr7:66095400-66101000	Weak transcription	NH-A	brain
22	chr7:66095400-66103200	Weak transcription	Pancreas	Pancrea
23	chr7:66095800-66100800	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr7:66095800-66101000	Weak transcription	HSMM	muscle
25	chr7:66095800-66101000	Weak transcription	K562	blood
26	chr7:66095800-66102800	Weak transcription	Fetal Brain Male	brain
27	chr7:66095800-66103200	Weak transcription	Esophagus	oesophagus
28	chr7:66096000-66113800	Strong transcription	Fetal Stomach	stomach
29	chr7:66096200-66101000	Weak transcription	NHLF	lung
30	chr7:66097000-66113400	Strong transcription	Fetal Brain Female	brain
31	chr7:66097600-66103000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr7:66097600-66103000	Weak transcription	Dnd41	blood
33	chr7:66097800-66118200	Weak transcription	Primary hematopoietic stem cells	blood
34	chr7:66098000-66100200	Strong transcription	Cortex derived primary cultured neurospheres	brain
35	chr7:66098000-66100200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr7:66098000-66101200	Strong transcription	Brain Germinal Matrix	brain
37	chr7:66098000-66102600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr7:66098000-66109800	Strong transcription	Adipose Nuclei	Adipose
39	chr7:66098000-66111000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr7:66098000-66111400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr7:66098000-66112800	Strong transcription	Fetal Muscle Trunk	muscle
42	chr7:66098000-66113200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr7:66098000-66113400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
44	chr7:66098200-66100200	Strong transcription	Primary B cells from cord blood	blood
45	chr7:66098200-66100200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr7:66098200-66100400	Strong transcription	Primary neutrophils fromperipheralblood	blood
47	chr7:66098200-66100400	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
48	chr7:66098200-66100400	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
49	chr7:66098200-66100400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr7:66098200-66101000	Strong transcription	Skeletal Muscle Female	skeletal muscle

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