Variant report

Variant	rs572989242
Chromosome Location	chr3:141236956-141236957
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:141205718..141209155-chr3:141236007..141238625,3	MCF-7	breast:
2	chr3:141203748..141207379-chr3:141236943..141239708,3	K562	blood:

Variant related genes	Relation type
ENSG00000155903	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006237	chr3:141227525-141300722	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1014365	chr3:141235379-141282615	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141207000-141255000	Weak transcription	Aorta	Aorta
2	chr3:141210400-141248000	Weak transcription	NHLF	lung
3	chr3:141216000-141239600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr3:141217800-141258400	Weak transcription	Psoas Muscle	Psoas
5	chr3:141226600-141254400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr3:141227400-141242800	Weak transcription	Ovary	ovary
7	chr3:141228400-141246600	Strong transcription	Dnd41	blood
8	chr3:141229400-141267400	Weak transcription	Fetal Heart	heart
9	chr3:141230000-141259800	Weak transcription	Small Intestine	intestine
10	chr3:141230400-141243000	Weak transcription	Spleen	Spleen
11	chr3:141231000-141243000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr3:141231200-141237000	Strong transcription	Primary T cells fromperipheralblood	blood
13	chr3:141231200-141240200	Strong transcription	Primary B cells from peripheral blood	blood
14	chr3:141231200-141240800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr3:141231200-141245000	Strong transcription	Fetal Thymus	thymus
16	chr3:141231600-141254400	Weak transcription	Fetal Kidney	kidney
17	chr3:141231600-141263600	Weak transcription	Fetal Brain Male	brain
18	chr3:141231800-141242600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr3:141232000-141241800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr3:141232200-141237800	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr3:141232200-141245600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr3:141232200-141254400	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr3:141232400-141240000	Strong transcription	HUES64 Cell Line	embryonic stem cell
24	chr3:141232600-141239600	Strong transcription	Osteobl	bone
25	chr3:141232600-141244400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr3:141232800-141237200	Strong transcription	Duodenum Smooth Muscle	Duodenum
27	chr3:141232800-141239600	Strong transcription	Primary T cells from cord blood	blood
28	chr3:141232800-141240000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr3:141233200-141237000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr3:141233200-141237200	Strong transcription	Rectal Mucosa Donor 29	rectum
31	chr3:141233400-141237400	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr3:141233400-141237600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr3:141234000-141254400	Weak transcription	Right Ventricle	heart
34	chr3:141234200-141237400	Strong transcription	Fetal Muscle Leg	muscle
35	chr3:141234600-141237800	Strong transcription	Primary T helper cells PMA-I stimulated	--
36	chr3:141235000-141237000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr3:141235000-141237000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr3:141235200-141237000	Strong transcription	Brain Anterior Caudate	brain
39	chr3:141235200-141237200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr3:141235200-141237400	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr3:141235200-141238400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
42	chr3:141235400-141237000	Strong transcription	Cortex derived primary cultured neurospheres	brain
43	chr3:141235400-141237000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr3:141235400-141237000	Strong transcription	Brain Hippocampus Middle	brain
45	chr3:141235400-141237000	Strong transcription	A549	lung
46	chr3:141235400-141237400	Strong transcription	Primary T killer memory cells from peripheral blood	blood
47	chr3:141235400-141239800	Strong transcription	HUES48 Cell Line	embryonic stem cell
48	chr3:141235600-141237000	Strong transcription	Fetal Brain Female	brain
49	chr3:141235600-141237200	Strong transcription	Fetal Muscle Trunk	muscle
50	chr3:141235600-141237400	Strong transcription	Fetal Stomach	stomach

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