Variant report

Variant	rs57300146
Chromosome Location	chr4:102123991-102123992
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:102121617..102124341-chr4:102190145..102192909,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11935869	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs3730251	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6836390	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73833259	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv999741	chr4:102009017-102454115	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
3	nsv537199	chr4:102009017-102454115	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1004766	chr4:102009017-102713765	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
5	nsv537200	chr4:102009017-102713765	Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1011351	chr4:102056024-102450302	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:102105400-102126200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr4:102107600-102126600	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr4:102109200-102126200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr4:102113200-102124400	Weak transcription	Pancreas	Pancrea
5	chr4:102113800-102126200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr4:102113800-102127200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr4:102113800-102131800	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr4:102117200-102125800	Weak transcription	Dnd41	blood
9	chr4:102117200-102126200	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr4:102117800-102124200	Enhancers	Pancreatic Islets	Pancreatic Islet
11	chr4:102118000-102132600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr4:102118200-102126800	Weak transcription	Primary hematopoietic stem cells	blood
13	chr4:102118800-102126200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr4:102119600-102126200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr4:102120000-102131400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr4:102120200-102125200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr4:102120600-102126600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr4:102121000-102126600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr4:102121600-102127000	Weak transcription	Brain Hippocampus Middle	brain
20	chr4:102121800-102125200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr4:102121800-102126600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr4:102121800-102128600	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr4:102121800-102131200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr4:102121800-102132600	Weak transcription	Colon Smooth Muscle	Colon
25	chr4:102122000-102127000	Weak transcription	HSMM	muscle
26	chr4:102122000-102132400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr4:102122600-102124200	Enhancers	Brain Anterior Caudate	brain
28	chr4:102122600-102127000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr4:102122800-102126200	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr4:102122800-102126600	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr4:102122800-102126800	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chr4:102123000-102125400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr4:102123000-102126600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr4:102123000-102126600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr4:102123000-102126600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr4:102123000-102126600	Weak transcription	Monocytes-CD14+_RO01746	blood
37	chr4:102123000-102126800	Weak transcription	NH-A	brain
38	chr4:102123000-102127000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr4:102123000-102127000	Weak transcription	NHDF-Ad	bronchial
40	chr4:102123000-102129400	Weak transcription	Right Ventricle	heart
41	chr4:102123200-102124400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr4:102123200-102125600	Weak transcription	Ovary	ovary
43	chr4:102123200-102125800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr4:102123200-102126600	Weak transcription	Osteobl	bone
45	chr4:102123200-102126800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr4:102123200-102127000	Weak transcription	Primary B cells from peripheral blood	blood
47	chr4:102123200-102127000	Weak transcription	HMEC	breast
48	chr4:102123200-102131400	Weak transcription	Aorta	Aorta
49	chr4:102123200-102131600	Weak transcription	Small Intestine	intestine
50	chr4:102123200-102132200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links