Variant report

Variant	rs573019797
Chromosome Location	chr12:63030827-63030828
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:62995253..63000922-chr12:63028846..63036538,11	MCF-7	breast:

Variant related genes	Relation type
ENSG00000221949	Chromatin interaction
ENSG00000257354	Chromatin interaction
ENSG00000199179	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv53806	chr12:63030522-63033404	Enhancers Weak transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63026600-63032600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr12:63026600-63034200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr12:63026600-63049800	Weak transcription	Right Atrium	heart
4	chr12:63027200-63034000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr12:63028000-63031800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr12:63029000-63031400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr12:63029600-63032800	Weak transcription	A549	lung
8	chr12:63030000-63031400	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr12:63030000-63034200	Weak transcription	Osteobl	bone
10	chr12:63030000-63034400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr12:63030000-63038400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr12:63030000-63040400	Weak transcription	Brain Hippocampus Middle	brain
13	chr12:63030000-63040800	Weak transcription	Brain Angular Gyrus	brain
14	chr12:63030400-63031000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr12:63030400-63031400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr12:63030400-63033800	Weak transcription	HepG2	liver
17	chr12:63030400-63034200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr12:63030400-63034400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr12:63030400-63034600	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr12:63030400-63035000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr12:63030400-63035400	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr12:63030400-63040200	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr12:63030400-63040600	Weak transcription	Brain Substantia Nigra	brain
24	chr12:63030400-63040800	Weak transcription	Brain Anterior Caudate	brain
25	chr12:63030600-63031800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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