Variant report

Variant	rs573023095
Chromosome Location	chr14:39901034-39901035
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:39638023..39641762-chr14:39900094..39905872,5	MCF-7	breast:
2	chr14:39644686..39646338-chr14:39899658..39902040,2	K562	blood:
3	chr14:39900771..39901524-chr9:130565165..130566143,2	Hela-S3	cervix:
4	chr14:39734882..39737237-chr14:39899749..39901875,2	MCF-7	breast:
5	chr14:39572264..39573816-chr14:39900834..39903460,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000150527	Chromatin interaction
ENSG00000258941	Chromatin interaction
ENSG00000258940	Chromatin interaction
ENSG00000182400	Chromatin interaction
ENSG00000100934	Chromatin interaction
ENSG00000259083	Chromatin interaction
ENSG00000258651	Chromatin interaction
ENSG00000136877	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037183	chr14:39736939-39949233	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv542048	chr14:39736939-39949233	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	esv3523177	chr14:39875036-40128325	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
4	esv3523178	chr14:39875036-40128325	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
5	nsv832774	chr14:39897746-40060823	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
6	esv3428481	chr14:39900201-39903099	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39897800-39903000	Active TSS	Brain Inferior Temporal Lobe	brain
2	chr14:39898800-39901200	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
3	chr14:39899000-39903000	Active TSS	Psoas Muscle	Psoas
4	chr14:39899000-39903000	Active TSS	Right Atrium	heart
5	chr14:39899000-39903200	Active TSS	Aorta	Aorta
6	chr14:39899000-39903200	Active TSS	Ovary	ovary
7	chr14:39899200-39903000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr14:39899200-39903200	Active TSS	HUES6 Cell Line	embryonic stem cell
9	chr14:39899200-39903200	Active TSS	NHLF	lung
10	chr14:39899400-39902600	Active TSS	Brain Hippocampus Middle	brain
11	chr14:39899400-39902600	Active TSS	Fetal Heart	heart
12	chr14:39899400-39902800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr14:39899400-39902800	Active TSS	Rectal Smooth Muscle	rectum
14	chr14:39899400-39903000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr14:39899400-39903200	Active TSS	Right Ventricle	heart
16	chr14:39899600-39902800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr14:39899600-39902800	Active TSS	NHDF-Ad	bronchial
18	chr14:39899600-39903000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr14:39899600-39903000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr14:39899600-39903000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr14:39899600-39903000	Active TSS	Left Ventricle	heart
22	chr14:39899800-39902400	Active TSS	Brain Substantia Nigra	brain
23	chr14:39899800-39902800	Active TSS	iPS-20b Cell Line	embryonic stem cell
24	chr14:39899800-39902800	Active TSS	GM12878-XiMat	blood
25	chr14:39899800-39903000	Active TSS	HSMMtube	muscle
26	chr14:39899800-39903200	Active TSS	H1 Cell Line	embryonic stem cell
27	chr14:39899800-39903200	Active TSS	HUES48 Cell Line	embryonic stem cell
28	chr14:39899800-39903200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr14:39899800-39903200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
30	chr14:39899800-39903200	Active TSS	Stomach Mucosa	stomach
31	chr14:39899800-39903200	Active TSS	HSMM	muscle
32	chr14:39899800-39903400	Active TSS	Pancreatic Islets	Pancreatic Islet
33	chr14:39900000-39902600	Active TSS	A549	lung
34	chr14:39900000-39902800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr14:39900000-39902800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr14:39900000-39902800	Active TSS	Colon Smooth Muscle	Colon
37	chr14:39900000-39903000	Active TSS	iPS-15b Cell Line	embryonic stem cell
38	chr14:39900000-39903200	Active TSS	ES-I3 Cell Line	embryonic stem cell
39	chr14:39900000-39903200	Active TSS	iPS-18 Cell Line	embryonic stem cell
40	chr14:39900000-39903200	Active TSS	Fetal Stomach	stomach
41	chr14:39900200-39902000	Active TSS	Primary T helper naive cells from peripheral blood	blood
42	chr14:39900200-39902000	Active TSS	Monocytes-CD14+_RO01746	blood
43	chr14:39900200-39902200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr14:39900200-39902200	Active TSS	Thymus	Thymus
45	chr14:39900200-39902400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr14:39900200-39902400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr14:39900200-39902400	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
48	chr14:39900200-39902400	Active TSS	Fetal Brain Male	brain
49	chr14:39900200-39902400	Active TSS	Fetal Brain Female	brain
50	chr14:39900200-39902600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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