Variant report

Variant	rs57302613
Chromosome Location	chr15:78002060-78002061
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:35)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:35 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr15:78001901-78002096	HepG2	liver:	n/a	n/a
2	REST	chr15:78001078-78002137	ECC-1	luminal epithelium:	n/a	n/a
3	CTCF	chr15:78001832-78002299	K562	blood:	n/a	n/a
4	CTCF	chr15:78001988-78002079	HepG2	liver:	n/a	n/a
5	CTCF	chr15:78001960-78002110	AG09309	skin:	n/a	n/a
6	RAD21	chr15:78001971-78002083	K562	blood:	n/a	n/a
7	RAD21	chr15:78001887-78002172	HepG2	liver:	n/a	n/a
8	REST	chr15:78001503-78002083	Hela-S3	cervix:	n/a	n/a
9	RAD21	chr15:78001909-78002092	K562	blood:	n/a	n/a
10	CTCF	chr15:78001960-78002110	HepG2	liver:	n/a	n/a
11	CTCF	chr15:78001920-78002070	GM12869	blood:	n/a	n/a
12	CTCF	chr15:78002020-78002170	AG09309	skin:	n/a	n/a
13	CTCF	chr15:78001940-78002090	A549	lung:	n/a	n/a
14	CEBPB	chr15:78001895-78002100	K562	blood:	n/a	n/a
15	CTCF	chr15:78001980-78002130	K562	blood:	n/a	n/a
16	RAD21	chr15:78001952-78002128	H1-hESC	embryonic stem cell:	n/a	n/a
17	REST	chr15:78001407-78002075	K562	blood:	n/a	n/a
18	CEBPB	chr15:78001873-78002076	HepG2	liver:	n/a	n/a
19	CTCF	chr15:78001973-78002103	A549	lung:	n/a	n/a
20	REST	chr15:78001198-78002133	ECC-1	luminal epithelium:	n/a	n/a
21	TCF7L2	chr15:78001914-78002178	PANC-1	pancreas:	n/a	chr15:78002048-78002064 chr15:78002048-78002064 chr15:78002052-78002061
22	RAD21	chr15:78001982-78002103	Hela-S3	cervix:	n/a	n/a
23	REST	chr15:78001214-78002139	PFSK-1	brain:	n/a	n/a
24	CTCF	chr15:78001871-78002194	K562	blood:	n/a	n/a
25	CTCF	chr15:78001920-78002070	Caco-2	colon:	n/a	n/a
26	POLR2A	chr15:78001958-78002158	K562	blood:	n/a	n/a
27	REST	chr15:78001287-78002183	A549	lung:	n/a	n/a
28	CTCF	chr15:78001898-78002137	K562	blood:	n/a	n/a
29	CTCF	chr15:78001959-78002110	Hela-S3	cervix:	n/a	n/a
30	CTCF	chr15:78002000-78002150	MCF-7	breast:	n/a	n/a
31	REST	chr15:78001246-78002193	HL-60	blood:	n/a	n/a
32	RAD21	chr15:78001917-78002067	HepG2	liver:	n/a	n/a
33	CTCF	chr15:78001941-78002128	K562	blood:	n/a	n/a
34	CTCF	chr15:78002015-78002068	MCF-7	breast:	n/a	n/a
35	RAD21	chr15:78001890-78002212	H1-hESC	embryonic stem cell:	n/a	n/a

No data

Variant related genes	Relation type
LINGO1	TF binding region

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs58139537	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73465852	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv833060	chr15:77816654-78035204	Weak transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv1806097	chr15:77817889-78301377	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
5	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
6	nsv570141	chr15:77985554-78017361	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv570142	chr15:77993282-78010746	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv570143	chr15:77993282-78017361	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv833061	chr15:77998374-78121905	Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv570144	chr15:77999436-78010949	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv570145	chr15:77999436-78012025	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77969200-78007600	Weak transcription	Right Atrium	heart
2	chr15:77992200-78002200	Weak transcription	Fetal Brain Male	brain
3	chr15:77995400-78004200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr15:77999400-78003600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr15:77999800-78003600	Weak transcription	Brain Angular Gyrus	brain
6	chr15:78000200-78002200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr15:78002000-78002800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:78002000-78003600	Enhancers	Breast Myoepithelial Primary Cells	Breast

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