The 2.0 version of rSNPBase

Variant report

Variant rs573047529
Chromosome Location chr3:56830969-56830970
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:95 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:56807000-56833200 Weak transcription Placenta Amnion Placenta Amnion
2 chr3:56818600-56832000 Weak transcription Rectal Smooth Muscle rectum
3 chr3:56819200-56834400 Weak transcription Fetal Muscle Trunk muscle
4 chr3:56820600-56834600 Weak transcription NHDF-Ad bronchial
5 chr3:56822400-56833200 Weak transcription Fetal Stomach stomach
6 chr3:56822800-56833200 Weak transcription Duodenum Mucosa Duodenum
7 chr3:56823400-56833200 Weak transcription Fetal Muscle Leg muscle
8 chr3:56825000-56831800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
9 chr3:56825200-56832000 Weak transcription Brain Substantia Nigra brain
10 chr3:56825400-56831800 Weak transcription NHEK skin
11 chr3:56825600-56832400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
12 chr3:56826400-56833200 Weak transcription Stomach Smooth Muscle stomach
13 chr3:56826600-56831000 Weak transcription Spleen Spleen
14 chr3:56826600-56831800 Weak transcription Psoas Muscle Psoas
15 chr3:56827400-56834400 Weak transcription Muscle Satellite Cultured Cells --
16 chr3:56827600-56831200 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
17 chr3:56827800-56831200 Enhancers Pancreas Pancrea
18 chr3:56828000-56831000 Enhancers Primary monocytes fromperipheralblood blood
19 chr3:56828200-56832400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
20 chr3:56828600-56831400 Enhancers Breast Myoepithelial Primary Cells Breast
21 chr3:56829000-56831000 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
22 chr3:56829000-56831000 Enhancers Fetal Lung lung
23 chr3:56829000-56831000 Enhancers Sigmoid Colon Sigmoid Colon
24 chr3:56829000-56831200 Enhancers Primary hematopoietic stem cells short term culture blood
25 chr3:56829000-56831200 Enhancers Placenta Placenta
26 chr3:56829000-56831200 Enhancers Left Ventricle heart
27 chr3:56829000-56832000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
28 chr3:56829000-56832400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
29 chr3:56829000-56832400 Enhancers Colon Smooth Muscle Colon
30 chr3:56829000-56832400 Genic enhancers Fetal Thymus thymus
31 chr3:56829000-56832600 Enhancers HepG2 liver
32 chr3:56829000-56833200 Enhancers Fetal Adrenal Gland Adrenal Gland
33 chr3:56829000-56833200 Enhancers Stomach Mucosa stomach
34 chr3:56829200-56831200 Enhancers Osteobl bone
35 chr3:56829200-56831600 Genic enhancers Primary T cells from cord blood blood
36 chr3:56829200-56831800 Transcr. at gene 5' and 3' Primary T helper cells PMA-I stimulated --
37 chr3:56829400-56832000 Enhancers Primary T helper naive cells fromperipheralblood blood
38 chr3:56829400-56832000 Enhancers Pancreatic Islets Pancreatic Islet
39 chr3:56829400-56832400 Weak transcription Duodenum Smooth Muscle Duodenum
40 chr3:56829400-56833000 Flanking Active TSS Primary T regulatory cells fromperipheralblood blood
41 chr3:56829400-56833200 Weak transcription Hela-S3 cervix
42 chr3:56829600-56831000 Weak transcription Fetal Kidney kidney
43 chr3:56829600-56833200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
44 chr3:56829600-56833200 Enhancers Fetal Brain Male brain
45 chr3:56829800-56831000 Enhancers Brain Cingulate Gyrus brain
46 chr3:56829800-56831000 Enhancers Small Intestine intestine
47 chr3:56829800-56832000 Enhancers Brain Hippocampus Middle brain
48 chr3:56830000-56831000 Flanking Active TSS Primary T killer memory cells from peripheral blood blood
49 chr3:56830000-56831200 Active TSS Brain Inferior Temporal Lobe brain
50 chr3:56830000-56831200 Flanking Active TSS GM12878-XiMat blood

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Last update: Aug 31, 2015