Variant report

Variant	rs57308869
Chromosome Location	chr7:117819359-117819360
allele	-/AA
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10247768	0.85[ASN][1000 genomes]
rs10487392	0.81[ASN][1000 genomes]
rs11542074	0.85[ASN][1000 genomes]
rs11974039	0.81[ASN][1000 genomes]
rs12154684	0.83[ASN][1000 genomes]
rs1544584	0.84[ASN][1000 genomes]
rs17140984	0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs17141053	0.82[ASN][1000 genomes]
rs2215628	0.85[ASN][1000 genomes]
rs2286863	0.85[ASN][1000 genomes]
rs33924981	0.83[ASN][1000 genomes]
rs34019303	0.83[ASN][1000 genomes]
rs35218902	0.82[ASN][1000 genomes]
rs35485182	0.83[ASN][1000 genomes]
rs45604739	0.85[ASN][1000 genomes]
rs4730837	0.82[ASN][1000 genomes]
rs62466471	0.82[ASN][1000 genomes]
rs62466515	0.83[ASN][1000 genomes]
rs62468297	0.83[ASN][1000 genomes]
rs7786233	0.82[ASN][1000 genomes]
rs9641593	0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv889088	chr7:117744660-117913648	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117816000-117822600	Weak transcription	NHEK	skin
2	chr7:117816200-117822800	Weak transcription	Fetal Heart	heart
3	chr7:117816400-117822800	Weak transcription	Primary B cells from cord blood	blood
4	chr7:117818400-117822400	Weak transcription	Pancreas	Pancrea
5	chr7:117818800-117822400	Weak transcription	Liver	Liver
6	chr7:117818800-117822800	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr7:117819200-117822800	Weak transcription	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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