The 2.0 version of rSNPBase

Variant report

Variant rs573096158
Chromosome Location chr1:179078046-179078047
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:125 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:179053200-179096000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
2 chr1:179054000-179079400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
3 chr1:179059200-179096400 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
4 chr1:179059400-179090400 Strong transcription HUVEC blood vessel
5 chr1:179061400-179090400 Strong transcription HSMM muscle
6 chr1:179062000-179088000 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
7 chr1:179063200-179112000 Weak transcription Fetal Kidney kidney
8 chr1:179064200-179078200 Weak transcription Right Ventricle heart
9 chr1:179064800-179079200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
10 chr1:179064800-179097800 Weak transcription Primary T killer memory cells from peripheral blood blood
11 chr1:179069400-179080400 Strong transcription HMEC breast
12 chr1:179070400-179087200 Weak transcription Psoas Muscle Psoas
13 chr1:179071400-179090400 Strong transcription NHDF-Ad bronchial
14 chr1:179072000-179090400 Strong transcription Osteobl bone
15 chr1:179072200-179090000 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
16 chr1:179074200-179088200 Strong transcription NHEK skin
17 chr1:179074200-179091000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
18 chr1:179074400-179088200 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
19 chr1:179074600-179083000 Strong transcription Primary T cells from cord blood blood
20 chr1:179075200-179091200 Strong transcription NHLF lung
21 chr1:179075400-179080000 Strong transcription Foreskin Melanocyte Primary Cells skin01 Skin
22 chr1:179075400-179084200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
23 chr1:179075400-179091000 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
24 chr1:179075400-179091400 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
25 chr1:179075400-179096200 Strong transcription Breast Myoepithelial Primary Cells Breast
26 chr1:179075600-179080000 Strong transcription Hela-S3 cervix
27 chr1:179075600-179080200 Strong transcription Primary monocytes fromperipheralblood blood
28 chr1:179075600-179081000 Strong transcription Fetal Brain Female brain
29 chr1:179075600-179081800 Strong transcription HUES6 Cell Line embryonic stem cell
30 chr1:179075600-179082000 Strong transcription Cortex derived primary cultured neurospheres brain
31 chr1:179075600-179082200 Strong transcription Placenta Placenta
32 chr1:179075600-179082800 Strong transcription Stomach Smooth Muscle stomach
33 chr1:179075600-179084000 Strong transcription Monocytes-CD14+_RO01746 blood
34 chr1:179075600-179089200 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
35 chr1:179075800-179080000 Strong transcription Placenta Amnion Placenta Amnion
36 chr1:179075800-179081000 Strong transcription Primary T cells fromperipheralblood blood
37 chr1:179075800-179081600 Strong transcription Primary T helper naive cells fromperipheralblood blood
38 chr1:179075800-179082400 Strong transcription Brain Angular Gyrus brain
39 chr1:179075800-179082400 Strong transcription Duodenum Smooth Muscle Duodenum
40 chr1:179075800-179082800 Strong transcription Fetal Intestine Large intestine
41 chr1:179075800-179082800 Strong transcription Rectal Mucosa Donor 29 rectum
42 chr1:179075800-179083600 Strong transcription Lung lung
43 chr1:179075800-179084600 Strong transcription A549 lung
44 chr1:179075800-179089600 Strong transcription Primary hematopoietic stem cells short term culture blood
45 chr1:179076000-179078600 Enhancers Fetal Heart heart
46 chr1:179076000-179080000 Strong transcription Brain Anterior Caudate brain
47 chr1:179076000-179080000 Strong transcription Rectal Smooth Muscle rectum
48 chr1:179076000-179080800 Strong transcription Brain Inferior Temporal Lobe brain
49 chr1:179076000-179081600 Strong transcription HUES48 Cell Line embryonic stem cell
50 chr1:179076000-179081600 Strong transcription Primary B cells from peripheral blood blood

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Last update: Aug 31, 2015