Variant report

Variant	rs57310065
Chromosome Location	chr13:80166633-80166634
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17071613	0.94[AFR][1000 genomes]
rs57066341	0.87[AFR][1000 genomes]
rs59105864	0.87[AFR][1000 genomes]
rs60240323	0.87[AFR][1000 genomes]
rs73551551	0.89[AFR][1000 genomes]
rs73551578	0.87[AFR][1000 genomes]
rs73551581	0.85[AFR][1000 genomes]
rs73551589	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916983	chr13:80065879-80249702	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1041994	chr13:80123596-80247708	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80164200-80167400	Weak transcription	HSMM	muscle
2	chr13:80164400-80167400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr13:80164400-80167400	Weak transcription	HSMMtube	muscle
4	chr13:80164600-80167200	Weak transcription	Osteobl	bone
5	chr13:80164600-80167800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr13:80164600-80169800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr13:80164800-80167200	Weak transcription	Fetal Muscle Leg	muscle
8	chr13:80165400-80166800	Weak transcription	Adipose Nuclei	Adipose
9	chr13:80165800-80166800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr13:80165800-80166800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr13:80165800-80166800	Weak transcription	NHEK	skin
12	chr13:80165800-80167200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr13:80165800-80167200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr13:80166000-80167000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr13:80166200-80167400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr13:80166600-80169000	Enhancers	HMEC	breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links