Variant report

Variant	rs573116907
Chromosome Location	chr13:67855829-67855830
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035741	chr13:67212973-68077950	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv541817	chr13:67212973-68077950	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv562140	chr13:67820503-67858550	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv562141	chr13:67842588-67878422	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv2763033	chr13:67853794-68042797	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv1046032	chr13:67853794-68056887	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv527729	chr13:67854436-68047717	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:67853000-67857800	Weak transcription	NH-A	brain
2	chr13:67854400-67856400	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr13:67854400-67856600	Enhancers	Brain Germinal Matrix	brain
4	chr13:67855200-67856000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr13:67855200-67856200	Enhancers	HSMM	muscle
6	chr13:67855400-67856000	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr13:67855400-67856000	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr13:67855600-67856000	Enhancers	H1 Cell Line	embryonic stem cell
9	chr13:67855600-67856000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr13:67855600-67856000	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr13:67855600-67856000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr13:67855600-67856000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr13:67855600-67856600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr13:67855800-67856200	Enhancers	Muscle Satellite Cultured Cells	--
15	chr13:67855800-67858000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links