Variant report

Variant	rs57313046
Chromosome Location	chr19:41955415-41955416
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:41955014..41955888-chr19:42048054..42049030,2	K562	blood:
2	chr19:41954968..41955934-chr19:42101318..42102296,4	MCF-7	breast:
3	chr19:41954980..41955905-chr19:42076786..42077640,5	K562	blood:
4	chr19:41954976..41956003-chr19:42076182..42077940,10	MCF-7	breast:
5	chr19:41955214..41955908-chr19:42043733..42044434,2	MCF-7	breast:
6	chr19:41955066..41955972-chr19:42043125..42044734,10	MCF-7	breast:
7	chr19:41954921..41955448-chr19:42069995..42070621,2	MCF-7	breast:
8	chr19:41954991..41955547-chr19:42076737..42077301,2	MCF-7	breast:
9	chr19:41955388..41955916-chr19:42101364..42101971,2	K562	blood:
10	chr19:41955365..41955940-chr19:42043884..42044391,2	K562	blood:
11	chr19:41955026..41955865-chr19:42069595..42070117,2	K562	blood:
12	chr19:41954861..41955874-chr19:42069542..42070514,6	MCF-7	breast:
13	chr19:41953484..41955550-chr19:42076712..42078351,2	MCF-7	breast:

No data

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10407348	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10407360	0.94[ASN][1000 genomes]
rs10409393	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10426293	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11083620	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12459980	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12462093	0.92[ASN][1000 genomes]
rs2079809	0.93[ASN][1000 genomes]
rs2079810	0.94[ASN][1000 genomes]
rs2098107	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58040218	0.94[ASN][1000 genomes]
rs72480753	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72480754	0.94[ASN][1000 genomes]
rs7249489	0.94[ASN][1000 genomes]
rs7256981	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8104652	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8106554	0.94[ASN][1000 genomes]
rs8107951	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:41948000-41957200	Weak transcription	Esophagus	oesophagus
2	chr19:41953200-41955600	Weak transcription	Spleen	Spleen
3	chr19:41953400-41958600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr19:41953600-41955800	Enhancers	Primary B cells from peripheral blood	blood
5	chr19:41954800-41955600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr19:41954800-41955800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr19:41955000-41955600	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr19:41955000-41955600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr19:41955000-41955600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
10	chr19:41955000-41955600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr19:41955000-41955600	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr19:41955000-41955600	Enhancers	HepG2	liver
13	chr19:41955000-41955800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr19:41955000-41955800	Enhancers	Liver	Liver
15	chr19:41955000-41955800	Enhancers	Colon Smooth Muscle	Colon
16	chr19:41955000-41955800	Active TSS	Rectal Mucosa Donor 29	rectum
17	chr19:41955000-41956000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
18	chr19:41955200-41955600	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr19:41955200-41955600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr19:41955200-41955600	Flanking Active TSS	Duodenum Mucosa	Duodenum
21	chr19:41955200-41955600	Enhancers	Placenta	Placenta
22	chr19:41955200-41955600	Enhancers	Pancreas	Pancrea
23	chr19:41955200-41955800	Enhancers	Primary T killer memory cells from peripheral blood	blood
24	chr19:41955200-41956000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
25	chr19:41955200-41956200	Enhancers	GM12878-XiMat	blood
26	chr19:41955400-41955600	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr19:41955400-41955600	Active TSS	Primary B cells from cord blood	blood
28	chr19:41955400-41955600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
29	chr19:41955400-41955600	Enhancers	Primary hematopoietic stem cells short term culture	blood
30	chr19:41955400-41955600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
31	chr19:41955400-41955600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr19:41955400-41955600	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr19:41955400-41955600	Enhancers	Brain Angular Gyrus	brain
34	chr19:41955400-41955600	Enhancers	Brain Cingulate Gyrus	brain
35	chr19:41955400-41955600	Bivalent Enhancer	Fetal Stomach	stomach
36	chr19:41955400-41955600	Weak transcription	Right Atrium	heart
37	chr19:41955400-41955600	Bivalent Enhancer	A549	lung
38	chr19:41955400-41955600	Weak transcription	HUVEC	blood vessel
39	chr19:41955400-41955800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
40	chr19:41955400-41955800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
41	chr19:41955400-41955800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
42	chr19:41955400-41955800	Enhancers	Breast Myoepithelial Primary Cells	Breast
43	chr19:41955400-41955800	Enhancers	Primary T helper naive cells from peripheral blood	blood
44	chr19:41955400-41955800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
45	chr19:41955400-41955800	Enhancers	Primary T helper cells PMA-I stimulated	--
46	chr19:41955400-41955800	Enhancers	Primary T helper cells fromperipheralblood	blood
47	chr19:41955400-41955800	Enhancers	Adipose Nuclei	Adipose
48	chr19:41955400-41955800	Enhancers	Brain Hippocampus Middle	brain
49	chr19:41955400-41955800	Enhancers	Fetal Intestine Large	intestine
50	chr19:41955400-41955800	Enhancers	Fetal Intestine Small	intestine

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