Variant report

Variant	rs573142944
Chromosome Location	chr4:148629470-148629471
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028958	chr4:148377752-148793485	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv498083	chr4:148519825-148917583	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv293162	chr4:148628710-148631612	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148627000-148630600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:148627000-148634200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr4:148629000-148629600	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr4:148629000-148631400	Enhancers	Placenta	Placenta
5	chr4:148629200-148630200	Enhancers	HMEC	breast
6	chr4:148629200-148630400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr4:148629400-148629600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr4:148629400-148629600	Active TSS	Stomach Smooth Muscle	stomach
9	chr4:148629400-148629800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr4:148629400-148629800	Enhancers	Adipose Nuclei	Adipose
11	chr4:148629400-148629800	Active TSS	Brain Hippocampus Middle	brain
12	chr4:148629400-148629800	Active TSS	Colon Smooth Muscle	Colon
13	chr4:148629400-148629800	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
14	chr4:148629400-148629800	Active TSS	Skeletal Muscle Male	skeletal muscle
15	chr4:148629400-148629800	Active TSS	Skeletal Muscle Female	skeletal muscle
16	chr4:148629400-148629800	Enhancers	NHLF	lung
17	chr4:148629400-148631000	Weak transcription	GM12878-XiMat	blood
18	chr4:148629400-148634600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links