Variant report

Variant	rs573161496
Chromosome Location	chr5:1645672-1645673
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:1479406..1480370-chr5:1644706..1645695,7	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933805	chr5:1450724-1941619	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	nsv880740	chr5:1468287-1671200	Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	49 gene(s)	inside rSNPs	diseases
3	nsv881554	chr5:1468287-1696932	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	49 gene(s)	inside rSNPs	diseases
4	nsv817407	chr5:1495354-2191460	Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	107 gene(s)	inside rSNPs	diseases
5	nsv881096	chr5:1503610-1671200	Flanking Bivalent TSS/Enh Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases
6	nsv880390	chr5:1612612-1653418	Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv880788	chr5:1629407-1671200	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
8	nsv881328	chr5:1637461-1671200	Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
9	nsv596886	chr5:1644651-1655800	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv433369	chr5:1644735-1656054	Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:1644200-1645800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
2	chr5:1644400-1645800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
3	chr5:1644400-1645800	Bivalent Enhancer	Primary B cells from cord blood	blood
4	chr5:1644600-1645800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
5	chr5:1645200-1645800	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr5:1645200-1645800	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr5:1645200-1645800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr5:1645200-1645800	Bivalent/Poised TSS	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr5:1645200-1645800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr5:1645400-1645800	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr5:1645400-1645800	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
12	chr5:1645400-1645800	Bivalent Enhancer	Fetal Lung	lung
13	chr5:1645400-1645800	Enhancers	Spleen	Spleen
14	chr5:1645400-1645800	Active TSS	A549	lung
15	chr5:1645600-1645800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
16	chr5:1645600-1645800	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr5:1645600-1645800	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
18	chr5:1645600-1645800	Flanking Bivalent TSS/Enh	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr5:1645600-1645800	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr5:1645600-1645800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr5:1645600-1645800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr5:1645600-1645800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr5:1645600-1645800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr5:1645600-1645800	Bivalent Enhancer	Adipose Nuclei	Adipose
25	chr5:1645600-1645800	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
26	chr5:1645600-1645800	Bivalent Enhancer	Duodenum Mucosa	Duodenum
27	chr5:1645600-1645800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
28	chr5:1645600-1645800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
29	chr5:1645600-1645800	Bivalent Enhancer	Fetal Stomach	stomach
30	chr5:1645600-1645800	Bivalent Enhancer	Left Ventricle	heart
31	chr5:1645600-1645800	Enhancers	Ovary	ovary
32	chr5:1645600-1645800	Bivalent Enhancer	Rectal Smooth Muscle	rectum
33	chr5:1645600-1645800	Enhancers	Right Ventricle	heart
34	chr5:1645600-1645800	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
35	chr5:1645600-1645800	Bivalent Enhancer	Stomach Smooth Muscle	stomach
36	chr5:1645600-1645800	Bivalent Enhancer	HUVEC	blood vessel

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