Variant report

Variant	rs573172634
Chromosome Location	chr5:99883726-99883727
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599165	chr5:99469004-100063039	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	nsv948969	chr5:99534096-100133827	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv1021183	chr5:99625857-100221426	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
4	nsv882461	chr5:99745767-99927338	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv882462	chr5:99745767-100060150	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv1025132	chr5:99745775-99896429	Flanking Active TSS Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv1025890	chr5:99745775-99936186	Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
8	nsv1017420	chr5:99745775-100133140	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
9	nsv537825	chr5:99745775-100133140	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
10	nsv882463	chr5:99784116-99898851	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
11	nsv882464	chr5:99784116-99905367	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
12	nsv882465	chr5:99784116-99927338	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
13	nsv1018395	chr5:99827242-100003207	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
14	esv2763473	chr5:99883352-99907664	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:99871800-99886400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:99871800-99886400	Weak transcription	Lung	lung
3	chr5:99871800-99886800	Weak transcription	Pancreas	Pancrea
4	chr5:99871800-99889400	Weak transcription	Spleen	Spleen
5	chr5:99871800-99890200	Weak transcription	Gastric	stomach
6	chr5:99872400-99886200	Weak transcription	Small Intestine	intestine
7	chr5:99872400-99931400	Weak transcription	Aorta	Aorta
8	chr5:99872600-99886400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr5:99872600-99922800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr5:99872800-99886200	Weak transcription	HSMMtube	muscle
11	chr5:99872800-99886200	Weak transcription	Osteobl	bone
12	chr5:99872800-99886400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr5:99872800-99902000	Weak transcription	HSMM	muscle
14	chr5:99872800-99916200	Weak transcription	Ovary	ovary
15	chr5:99873000-99886400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr5:99873400-99897000	Weak transcription	Primary T cells from cord blood	blood
17	chr5:99873400-99916200	Weak transcription	Fetal Stomach	stomach
18	chr5:99873400-99930600	Weak transcription	NH-A	brain
19	chr5:99873600-99883800	Weak transcription	Brain Germinal Matrix	brain
20	chr5:99873800-99886400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr5:99874000-99886200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr5:99874000-99897800	Weak transcription	Adipose Nuclei	Adipose
23	chr5:99875600-99887600	Weak transcription	Fetal Brain Male	brain
24	chr5:99878400-99885800	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr5:99878400-99886400	Weak transcription	HMEC	breast
26	chr5:99878400-99930600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr5:99878600-99886400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr5:99878800-99886000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr5:99879600-99886200	Weak transcription	NHEK	skin
30	chr5:99879600-99897600	Weak transcription	Primary B cells from cord blood	blood
31	chr5:99880600-99897800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr5:99881000-99886000	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr5:99882200-99886400	Weak transcription	Fetal Muscle Leg	muscle
34	chr5:99882200-99886400	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr5:99882200-99887000	Weak transcription	Psoas Muscle	Psoas
36	chr5:99882200-99899200	Weak transcription	Left Ventricle	heart
37	chr5:99882400-99886400	Weak transcription	Fetal Lung	lung
38	chr5:99882800-99888800	Weak transcription	Primary hematopoietic stem cells	blood
39	chr5:99883200-99884000	Enhancers	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links