Variant report

Variant	rs57317418
Chromosome Location	chr6:114336637-114336638
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs58522530	0.85[ASN][1000 genomes]
rs58978364	0.85[ASN][1000 genomes]
rs59266365	0.85[ASN][1000 genomes]
rs59307219	0.83[ASN][1000 genomes]
rs59821189	0.85[ASN][1000 genomes]
rs60916860	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021774	chr6:114063971-114407280	Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv538422	chr6:114063971-114407280	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv1024062	chr6:114311029-114679557	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114329200-114342200	Weak transcription	Brain Substantia Nigra	brain
2	chr6:114329800-114338200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:114332600-114336800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:114332600-114337000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:114332800-114338000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:114332800-114338200	Weak transcription	Brain Hippocampus Middle	brain
7	chr6:114333000-114338000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:114333000-114339200	Weak transcription	Stomach Mucosa	stomach
9	chr6:114334400-114338200	Enhancers	HSMMtube	muscle
10	chr6:114335000-114338000	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr6:114335200-114337400	Weak transcription	HSMM	muscle
12	chr6:114335200-114338000	Weak transcription	Placenta	Placenta
13	chr6:114336000-114337400	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr6:114336400-114337400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links