Variant report

Variant	rs573186549
Chromosome Location	chr8:95567032-95567033
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:95564633..95567300-chr8:95651331..95653603,2	MCF-7	breast:
2	chr8:95564818..95567463-chr8:95729750..95733556,7	MCF-7	breast:
3	chr8:95565366..95567177-chr8:96036825..96038672,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KIAA1429-2	chr8:95566810-95567299	NONHSAT127780

Variant related genes	Relation type
ENSG00000261437	Chromatin interaction
ENSG00000156170	Chromatin interaction
ENSG00000104413	Chromatin interaction
ENSG00000156162	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv532338	chr8:95296118-95971825	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv429928	chr8:95488800-95672033	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv611750	chr8:95519205-95574634	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv1017256	chr8:95555083-95570079	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv1026768	chr8:95556054-95569566	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv1033318	chr8:95556054-95576338	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv1032065	chr8:95556054-95578349	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
10	nsv1016339	chr8:95556054-95585807	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
11	nsv1021702	chr8:95556054-95589194	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
12	nsv1033345	chr8:95556375-95570533	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
13	nsv1029802	chr8:95556959-95578349	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
14	esv3584580	chr8:95557287-95576350	Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
15	nsv438072	chr8:95558694-95571443	Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
16	nsv429929	chr8:95564533-95676894	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
17	nsv971684	chr8:95566071-95577827	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95564200-95567200	Active TSS	HMEC	breast
2	chr8:95564200-95567200	Active TSS	K562	blood
3	chr8:95564400-95567200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr8:95564400-95567200	Active TSS	NHLF	lung
5	chr8:95564600-95567200	Active TSS	Muscle Satellite Cultured Cells	--
6	chr8:95564600-95567200	Active TSS	A549	lung
7	chr8:95564600-95567200	Active TSS	NHDF-Ad	bronchial
8	chr8:95564600-95567400	Active TSS	GM12878-XiMat	blood
9	chr8:95564800-95567400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr8:95564800-95567400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr8:95565000-95567200	Active TSS	Stomach Smooth Muscle	stomach
12	chr8:95565200-95567200	Active TSS	Rectal Mucosa Donor 29	rectum
13	chr8:95565600-95567200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr8:95566200-95567200	Flanking Active TSS	Primary B cells from cord blood	blood
15	chr8:95566200-95567200	Flanking Active TSS	Primary hematopoietic stem cells	blood
16	chr8:95566200-95567400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr8:95566400-95567200	Flanking Active TSS	Primary T cells from cord blood	blood
18	chr8:95566400-95567200	Flanking Active TSS	Adipose Nuclei	Adipose
19	chr8:95566600-95567200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
20	chr8:95566600-95567200	Flanking Active TSS	Dnd41	blood
21	chr8:95566600-95567400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
22	chr8:95566800-95567200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
23	chr8:95566800-95567200	Active TSS	HepG2	liver
24	chr8:95566800-95567400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
25	chr8:95566800-95567400	Enhancers	Primary T killer memory cells from peripheral blood	blood
26	chr8:95566800-95569200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr8:95566800-95569800	Weak transcription	Stomach Mucosa	stomach
28	chr8:95566800-95573200	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr8:95566800-95573200	Weak transcription	Spleen	Spleen
30	chr8:95566800-95575200	Weak transcription	Small Intestine	intestine
31	chr8:95566800-95576000	Weak transcription	Fetal Heart	heart
32	chr8:95567000-95567200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr8:95567000-95567200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr8:95567000-95567200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
35	chr8:95567000-95567200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr8:95567000-95567200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr8:95567000-95567200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr8:95567000-95567200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr8:95567000-95567200	Enhancers	Liver	Liver
40	chr8:95567000-95567200	Enhancers	Brain Cingulate Gyrus	brain
41	chr8:95567000-95567200	Enhancers	Brain Germinal Matrix	brain
42	chr8:95567000-95567200	Enhancers	Duodenum Mucosa	Duodenum
43	chr8:95567000-95567200	Enhancers	Pancreatic Islets	Pancreatic Islet
44	chr8:95567000-95567200	Flanking Active TSS	HUVEC	blood vessel
45	chr8:95567000-95567200	Enhancers	NH-A	brain
46	chr8:95567000-95567200	Enhancers	NHEK	skin
47	chr8:95567000-95567200	Flanking Active TSS	Osteobl	bone
48	chr8:95567000-95567400	Enhancers	Primary T helper cells PMA-I stimulated	--
49	chr8:95567000-95567400	Enhancers	Cortex derived primary cultured neurospheres	brain
50	chr8:95567000-95567600	Enhancers	Primary B cells from peripheral blood	blood

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