Variant report

Variant	rs573202434
Chromosome Location	chr19:19258305-19258306
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:19247943..19252165-chr19:19253353..19258358,6	MCF-7	breast:
2	chr19:19244353..19249759-chr19:19255407..19258937,4	K562	blood:
3	chr19:19248259..19252724-chr19:19255347..19258957,6	K562	blood:
4	chr19:19256328..19259156-chr19:19260184..19262350,2	K562	blood:
5	chr19:19244353..19247237-chr19:19256209..19258577,3	K562	blood:
6	chr19:19256714..19258760-chr19:19284890..19287381,2	K562	blood:

Variant related genes	Relation type
ENSG00000064545	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833779	chr19:19163492-19313091	Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv911303	chr19:19256870-19505087	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv819543	chr19:19257144-19258357	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv3507927	chr19:19257302-19259300	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	esv3317998	chr19:19257888-19258393	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv5981	chr19:19257896-19258416	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv3507924	chr19:19257913-19258401	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv3507932	chr19:19257926-19258381	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv3507931	chr19:19257934-19258337	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv3507929	chr19:19257938-19258329	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	esv3317997	chr19:19257944-19258357	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	esv3317995	chr19:19257952-19258363	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	esv3317994	chr19:19257958-19258320	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	esv3507925	chr19:19257962-19258344	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:19249400-19259600	Weak transcription	Aorta	Aorta
2	chr19:19249400-19259800	Weak transcription	Left Ventricle	heart
3	chr19:19249400-19271200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr19:19249600-19258400	Weak transcription	Right Atrium	heart
5	chr19:19249600-19271800	Weak transcription	Brain Substantia Nigra	brain
6	chr19:19249600-19282600	Weak transcription	NHLF	lung
7	chr19:19249800-19258400	Weak transcription	Dnd41	blood
8	chr19:19249800-19258800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr19:19249800-19259600	Weak transcription	Primary T cells from cord blood	blood
10	chr19:19249800-19259800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr19:19249800-19260000	Weak transcription	Brain Anterior Caudate	brain
12	chr19:19249800-19261800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr19:19249800-19269000	Weak transcription	Brain Angular Gyrus	brain
14	chr19:19249800-19271200	Weak transcription	Primary hematopoietic stem cells	blood
15	chr19:19249800-19280600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr19:19250000-19261400	Weak transcription	HepG2	liver
17	chr19:19250000-19266800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr19:19250600-19271800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr19:19252800-19272400	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr19:19253600-19265600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr19:19255800-19261400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr19:19256000-19262600	Strong transcription	Primary neutrophils fromperipheralblood	blood
23	chr19:19256400-19258800	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr19:19257000-19259000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr19:19257000-19259800	Weak transcription	Brain Cingulate Gyrus	brain
26	chr19:19257000-19259800	Weak transcription	Brain Germinal Matrix	brain
27	chr19:19257000-19259800	Weak transcription	Fetal Lung	lung
28	chr19:19257000-19260600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr19:19257000-19261000	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr19:19257000-19261400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr19:19257000-19261600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr19:19257000-19261800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr19:19257000-19262000	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr19:19257000-19262400	Strong transcription	Fetal Intestine Small	intestine
35	chr19:19257000-19263000	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr19:19257000-19266600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr19:19257000-19271200	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr19:19257000-19271600	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr19:19257000-19280400	Weak transcription	Gastric	stomach
40	chr19:19257000-19280400	Weak transcription	Pancreas	Pancrea
41	chr19:19257200-19258400	Strong transcription	Right Ventricle	heart
42	chr19:19257200-19258800	Strong transcription	Primary monocytes fromperipheralblood	blood
43	chr19:19257200-19259400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr19:19257200-19262600	Strong transcription	Fetal Stomach	stomach
45	chr19:19257400-19258400	Strong transcription	Lung	lung
46	chr19:19257400-19259000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr19:19257400-19259000	Strong transcription	Brain Inferior Temporal Lobe	brain
48	chr19:19257400-19259000	Strong transcription	Colon Smooth Muscle	Colon
49	chr19:19257400-19259000	Strong transcription	Fetal Thymus	thymus
50	chr19:19257400-19259600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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