Variant report

Variant	rs573211
Chromosome Location	chr11:120044762-120044763
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:120041545..120045663-chr11:120098074..120102653,6	MCF-7	breast:
2	chr11:120043099..120045650-chr11:120048774..120051644,2	K562	blood:
3	chr11:120042899..120045222-chr11:120108366..120110220,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs2444240	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs470370	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs470373	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs470645	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs470876	0.81[ASN][1000 genomes]
rs471001	0.85[ASN][1000 genomes]
rs488672	1.00[ASN][1000 genomes]
rs4936509	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4938790	0.92[ASN][1000 genomes]
rs521556	0.97[ASN][1000 genomes]
rs528147	0.94[ASN][1000 genomes]
rs529657	0.97[ASN][1000 genomes]
rs529681	0.94[ASN][1000 genomes]
rs531260	1.00[ASN][1000 genomes]
rs533636	0.97[ASN][1000 genomes]
rs550164	0.80[ASN][1000 genomes]
rs566935	0.94[ASN][1000 genomes]
rs605374	0.81[ASN][1000 genomes]
rs626225	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs670855	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs896691	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv428581	chr11:120006048-120167603	Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv518464	chr11:120040442-120109967	Genic enhancers Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120040600-120049000	Weak transcription	Colon Smooth Muscle	Colon
2	chr11:120040600-120049600	Weak transcription	Right Atrium	heart
3	chr11:120042800-120045000	Enhancers	Brain Cingulate Gyrus	brain
4	chr11:120042800-120045000	Enhancers	Fetal Intestine Large	intestine
5	chr11:120043000-120045000	Enhancers	Fetal Stomach	stomach
6	chr11:120043200-120045000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr11:120043200-120045000	Enhancers	Fetal Lung	lung
8	chr11:120043400-120044800	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr11:120043400-120045600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr11:120043400-120045600	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr11:120043600-120045800	Weak transcription	Duodenum Mucosa	Duodenum
12	chr11:120043600-120048200	Weak transcription	Brain Hippocampus Middle	brain
13	chr11:120043600-120051000	Weak transcription	HepG2	liver
14	chr11:120043600-120057000	Weak transcription	Esophagus	oesophagus
15	chr11:120043800-120050400	Weak transcription	Liver	Liver
16	chr11:120044000-120045000	Genic enhancers	Fetal Intestine Small	intestine
17	chr11:120044400-120044800	Enhancers	Fetal Muscle Trunk	muscle
18	chr11:120044400-120048200	Weak transcription	Brain Substantia Nigra	brain
19	chr11:120044400-120049600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr11:120044400-120055200	Weak transcription	Rectal Smooth Muscle	rectum
21	chr11:120044600-120045800	Weak transcription	Brain Angular Gyrus	brain
22	chr11:120044600-120048200	Weak transcription	Brain Anterior Caudate	brain
23	chr11:120044600-120048200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr11:120044600-120051400	Weak transcription	Fetal Kidney	kidney
25	chr11:120044600-120051800	Weak transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links