Variant report

Variant	rs573213486
Chromosome Location	chr14:72008998-72008999
allele	-/TCTCCTCTTCCTCT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:71785895..71788432-chr14:72008692..72011140,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000197555	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498021	chr14:71874708-72128721	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3398985	chr14:71927884-72404676	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3421223	chr14:72008599-72012997	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71978400-72009400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr14:71978400-72014800	Weak transcription	HMEC	breast
3	chr14:71980000-72021200	Weak transcription	Hela-S3	cervix
4	chr14:71981400-72021400	Weak transcription	Duodenum Mucosa	Duodenum
5	chr14:71997000-72009000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr14:71997800-72017600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr14:72001400-72009800	Enhancers	Fetal Heart	heart
8	chr14:72002400-72009200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr14:72003000-72017800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr14:72003800-72009400	Weak transcription	HSMM	muscle
11	chr14:72006400-72009400	Enhancers	Spleen	Spleen
12	chr14:72006600-72019400	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr14:72006600-72021800	Weak transcription	Small Intestine	intestine
14	chr14:72007000-72009000	Enhancers	Fetal Lung	lung
15	chr14:72007000-72011200	Weak transcription	Right Ventricle	heart
16	chr14:72007200-72019600	Weak transcription	Primary B cells from cord blood	blood
17	chr14:72007200-72020200	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr14:72007200-72021800	Weak transcription	Primary hematopoietic stem cells	blood
19	chr14:72007400-72018200	Weak transcription	NHLF	lung
20	chr14:72007400-72020400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr14:72007600-72009800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr14:72007600-72010000	Weak transcription	Brain Anterior Caudate	brain
23	chr14:72007600-72012200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr14:72007600-72017400	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr14:72007600-72017400	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr14:72007800-72009800	Weak transcription	NHDF-Ad	bronchial
27	chr14:72007800-72016800	Weak transcription	Brain Hippocampus Middle	brain
28	chr14:72007800-72017200	Weak transcription	Osteobl	bone
29	chr14:72008400-72009200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
30	chr14:72008400-72009200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
31	chr14:72008400-72009800	Enhancers	Primary T cells from cord blood	blood
32	chr14:72008400-72017600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr14:72008400-72018200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr14:72008400-72018400	Weak transcription	Left Ventricle	heart
35	chr14:72008600-72009800	Enhancers	Primary T helper cells fromperipheralblood	blood
36	chr14:72008800-72009000	Enhancers	Right Atrium	heart
37	chr14:72008800-72009000	Enhancers	GM12878-XiMat	blood

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