Variant report

Variant	rs57322022
Chromosome Location	chr8:121760219-121760220
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs58113621	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58458628	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59586775	0.83[AFR][1000 genomes]
rs61396577	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73706732	1.00[AMR][1000 genomes]
rs73706738	1.00[AMR][1000 genomes]
rs73706743	1.00[AMR][1000 genomes]
rs73707103	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73710003	1.00[AMR][1000 genomes]
rs73710006	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73710014	1.00[AMR][1000 genomes]
rs73710059	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016172	chr8:121679590-121929916	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv891422	chr8:121680857-121819478	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121745200-121761200	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chr8:121745400-121761400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr8:121745400-121761600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr8:121745600-121761400	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr8:121745800-121761400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr8:121745800-121774200	Weak transcription	Fetal Stomach	stomach
7	chr8:121749600-121761400	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr8:121751000-121761000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr8:121751000-121761000	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr8:121751400-121760800	Enhancers	Primary T cells from cord blood	blood
11	chr8:121753400-121760800	Weak transcription	Thymus	Thymus
12	chr8:121756000-121760600	Weak transcription	Small Intestine	intestine
13	chr8:121756000-121761800	Weak transcription	Stomach Mucosa	stomach
14	chr8:121756800-121762600	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr8:121757000-121761400	Enhancers	Primary T cells fromperipheralblood	blood
16	chr8:121757000-121761400	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr8:121757200-121763800	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr8:121757400-121761400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr8:121757600-121763000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr8:121757800-121763400	Enhancers	Liver	Liver
21	chr8:121758200-121760600	Weak transcription	Fetal Muscle Leg	muscle
22	chr8:121758200-121768600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr8:121758200-121774400	Weak transcription	Left Ventricle	heart
24	chr8:121758400-121760400	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr8:121758400-121760400	Enhancers	Monocytes-CD14+_RO01746	blood
26	chr8:121758400-121760600	Weak transcription	Aorta	Aorta
27	chr8:121758400-121760600	Weak transcription	Psoas Muscle	Psoas
28	chr8:121758400-121760800	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr8:121758400-121761000	Weak transcription	Osteobl	bone
30	chr8:121758400-121769200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr8:121758400-121769400	Weak transcription	HSMM	muscle
32	chr8:121758400-121769400	Weak transcription	NHLF	lung
33	chr8:121758400-121770600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr8:121758400-121771800	Weak transcription	Pancreas	Pancrea
35	chr8:121758400-121774400	Weak transcription	Lung	lung
36	chr8:121759000-121761400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
37	chr8:121759200-121762600	Enhancers	HepG2	liver
38	chr8:121759400-121763600	Enhancers	Primary B cells from peripheral blood	blood
39	chr8:121759600-121761400	Enhancers	Primary hematopoietic stem cells short term culture	blood
40	chr8:121759600-121761400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr8:121759600-121761400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr8:121759600-121761400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr8:121759600-121761600	Enhancers	Primary hematopoietic stem cells	blood
44	chr8:121759600-121761600	Enhancers	Fetal Thymus	thymus
45	chr8:121759600-121763400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
46	chr8:121759800-121761400	Enhancers	GM12878-XiMat	blood
47	chr8:121759800-121761600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
48	chr8:121759800-121761800	Enhancers	Duodenum Mucosa	Duodenum
49	chr8:121759800-121762200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr8:121759800-121764400	Enhancers	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links