Variant report

Variant	rs573220609
Chromosome Location	chr6:56755754-56755755
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv934026	chr6:56382056-57184218	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv533050	chr6:56504480-57297586	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1021651	chr6:56569444-56966319	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv538228	chr6:56569444-56966319	Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv1022714	chr6:56729767-56826642	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv538229	chr6:56729767-56826642	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
8	nsv508408	chr6:56735681-56773285	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv5315	chr6:56752042-56798761	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
10	nsv436516	chr6:56754861-56761823	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56736400-56755800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:56749200-56769600	Weak transcription	Brain Angular Gyrus	brain
3	chr6:56752400-56767000	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr6:56753200-56756200	Enhancers	HUVEC	blood vessel
5	chr6:56753600-56757600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr6:56753600-56769600	Weak transcription	Brain Hippocampus Middle	brain
7	chr6:56753800-56755800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:56753800-56757400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:56753800-56757600	Enhancers	NHDF-Ad	bronchial
10	chr6:56754200-56756800	Enhancers	HSMMtube	muscle
11	chr6:56754200-56757000	Enhancers	NHLF	lung
12	chr6:56754200-56757400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:56754400-56755800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr6:56754400-56756200	Enhancers	HepG2	liver
15	chr6:56754400-56757000	Enhancers	Osteobl	bone
16	chr6:56754600-56756400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:56754600-56757200	Enhancers	Muscle Satellite Cultured Cells	--
18	chr6:56754800-56756000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr6:56754800-56756200	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr6:56754800-56756200	Genic enhancers	HSMM	muscle
21	chr6:56754800-56756800	Enhancers	K562	blood
22	chr6:56755000-56755800	Weak transcription	Primary T cells from cord blood	blood
23	chr6:56755000-56756000	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr6:56755000-56756000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr6:56755000-56756000	Enhancers	Brain Inferior Temporal Lobe	brain
26	chr6:56755000-56756200	Enhancers	Primary hematopoietic stem cells short term culture	blood
27	chr6:56755000-56756200	Enhancers	Colon Smooth Muscle	Colon
28	chr6:56755000-56756200	Enhancers	HMEC	breast
29	chr6:56755200-56757200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr6:56755200-56762800	Weak transcription	Brain Anterior Caudate	brain
31	chr6:56755400-56756200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr6:56755400-56756200	Enhancers	NHEK	skin
33	chr6:56755400-56756400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr6:56755400-56756800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr6:56755600-56756000	Enhancers	Primary monocytes fromperipheralblood	blood
36	chr6:56755600-56756000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr6:56755600-56756000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr6:56755600-56756000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr6:56755600-56756000	Enhancers	Rectal Smooth Muscle	rectum
40	chr6:56755600-56756000	Flanking Active TSS	A549	lung
41	chr6:56755600-56756000	Enhancers	Monocytes-CD14+_RO01746	blood
42	chr6:56755600-56756000	Flanking Active TSS	NH-A	brain
43	chr6:56755600-56756200	Flanking Active TSS	GM12878-XiMat	blood
44	chr6:56755600-56757600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links